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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:42.7 nTPM
HPA:42.7 nTPM
GTEx:98.3 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Pig:9.3 nTPM
Mouse:5.0 nTPM
Allen mouse:0.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 42.7
Sample id Sample description nTPM
Amygdala
nTPM: 42.7
2517 Female, age 94, left hemisphere 45.2
1987 Female, age 91, left hemisphere 44.9
2695 Female, age 67, right hemisphere 44.2
2514 Male, age 75, right hemisphere 41.0
2814 Male, age 76, right hemisphere 38.3
Basal amygdala
nTPM: 41.0
2609 Male, age 75, right hemisphere 43.5
2110 Male, age 80, left hemisphere 41.6
2243 Female, age 91, right hemisphere 40.8
2685 Female, age 94, left hemisphere 40.3
1955 Male, age 76, both hemispheres 40.2
2827 Female, age 67, right hemisphere 39.5
Central amygdala
nTPM: 41.4
2826 Female, age 94, left hemisphere 47.0
2515 Male, age 75, right hemisphere 41.8
2701 Female, age 91, right hemisphere 40.5
2239 Male, age 80, left hemisphere 39.8
1905 Male, age 76, both hemispheres 37.9
Corticomedial amygdala
nTPM: 39.8
2829 Male, age 80, left hemisphere 43.3
2242 Female, age 91, right hemisphere 40.5
2429 Female, age 94, left hemisphere 39.9
2428 Male, age 75, right hemisphere 39.4
2535 Female, age 67, right hemisphere 37.8
2240 Male, age 76, both hemispheres 37.5
Lateral amygdala
nTPM: 40.6
2516 Male, age 75, right hemisphere 43.4
2534 Female, age 94, left hemisphere 42.2
2255 Female, age 91, right hemisphere 41.0
2256 Male, age 80, left hemisphere 39.9
1883 Male, age 76, both hemispheres 38.8
2830 Female, age 67, right hemisphere 38.3
Stria terminalis, bed nucleus
nTPM: 40.4
1974 Female, age 91, both hemispheres 42.4
2486 Female, age 94, both hemispheres 40.6
2201 Male, age 74, unknown 38.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 98.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 98.3
Samples: 152

Max nTPM: 282.4
Min nTPM: 26.0
Std nTPM: 37.2
Median nTPM: 96.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 282.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 241.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 218.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 207.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 205.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 185.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 168.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 166.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 154.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 149.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 146.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 146.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 142.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 142.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 135.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 131.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 129.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 128.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 127.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 124.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 123.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 122.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 122.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 120.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 119.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 119.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 119.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 118.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 117.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 117.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 116.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 115.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 115.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 115.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 115.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 114.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 114.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 113.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 112.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 111.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 110.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 110.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 109.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 108.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 107.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 107.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 106.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 106.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 106.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 105.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 105.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 105.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 104.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 104.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 104.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 104.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 104.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 103.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 103.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 103.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 103.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 103.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 102.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 102.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 101.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 101.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 99.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 99.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 99.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 99.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 98.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 97.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 97.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 96.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 96.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 96.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 96.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 96.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 95.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 94.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 93.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 93.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 93.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 92.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 92.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 92.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 91.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 91.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 91.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 90.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 90.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 89.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 89.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 88.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 88.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 86.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 86.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 86.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 85.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 84.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 84.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 84.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 84.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 82.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 82.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 82.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 82.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 81.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 79.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 79.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 78.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 78.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 77.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 77.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 77.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 75.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 74.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 74.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 74.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 74.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 70.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 69.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 69.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 68.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 67.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 67.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 67.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 66.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 65.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 64.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 64.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 64.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 63.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 61.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 60.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 60.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 59.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 58.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 56.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 55.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 55.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 54.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 52.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 48.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 47.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 44.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 42.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 36.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 33.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 33.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 26.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 26.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 26.9
FF:10151-102I7 76 years, female 26.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.3
Pig sample Sample description nTPM
Amygdala
nTPM: 9.2
Samples: 4

Max nTPM: 10.9
Min nTPM: 6.4
Sample A Female 10.9
Sample B Female 9.3
Sample C Male 10.3
Sample D Male 6.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 5.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 5.0
Samples: 4

Max nTPM: 6.0
Min nTPM: 4.4
Sample A Male 6.0
Sample B Male 4.4
Sample C Female 4.7
Sample D Female 4.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.2
69262317 Antisense, RP_050303_01_H09, Mouse strain C57BL/6J (56 days, male) 0.2

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