MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:349.7 nTPM
HPA:349.7 nTPM
GTEx:391.7 nTPM
FANTOM5:147.5 Scaled Tags Per Million
Pig:244.5 nTPM
Mouse:509.7 nTPM
Allen mouse:6.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 349.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 334.3
2019 Male, age 18, unknown 355.2
2411 Female, age 72, unknown 351.9
1870 Female, age 42, unknown 341.0
1827 Male, age 72, unknown 339.9
2219 Male, age 76, both hemispheres 330.8
1833 Male, age 53, unknown 327.6
2666 Male, age 74, left hemisphere 327.1
1830 Male, age 51, unknown 325.3
2828 Female, age 72, unknown 324.2
2586 Male, age 75, left hemisphere 319.6
Dorsal raphe nucleus
nTPM: 339.0
2298 Female, age 72, unknown 359.6
1828 Male, age 53, unknown 341.0
2047 Male, age 72, unknown 335.9
2750 Male, age 76, both hemispheres 333.2
2016 Female, age 72, unknown 325.1
Inferior colliculus
nTPM: 346.2
2097 Female, age 72, unknown 378.3
1890 Male, age 53, unknown 351.6
1848 Female, age 42, unknown 336.1
2849 Male, age 72, unknown 319.0
Median raphe nucleus
nTPM: 327.4
2220 Male, age 76, midline 327.4
Pedunculopontine tegmental nucleus
nTPM: 346.3
1921 Female, age 85, both hemispheres 352.7
2338 Male, age 61, both hemispheres 345.6
2334 Male, age 80, both hemispheres 340.7
Periaquaductal grey, anterior
nTPM: 339.7
1947 Male, age 18, unknown 345.8
2502 Female, age 75, unknown 340.4
1795 Male, age 51, unknown 333.0
Periaquaductal grey, dorsal
nTPM: 326.3
2464 Female, age 72, unknown 331.0
1840 Male, age 53, unknown 328.6
1831 Male, age 72, unknown 326.3
2850 Male, age 76, both hemispheres 319.1
Periaquaductal grey, lateral
nTPM: 328.3
2272 Male, age 74, both hemispheres 339.6
2053 Male, age 18, unknown 330.7
2140 Male, age 76, both hemispheres 314.6
Pretectal area
nTPM: 344.4
2007 Male, age 72, unknown 368.4
1816 Male, age 51, unknown 365.9
1817 Female, age 42, unknown 359.8
1944 Female, age 72, unknown 356.9
1815 Male, age 53, unknown 350.6
2224 Female, age 72, unknown 345.2
2667 Female, age 75, unknown 336.5
2273 Male, age 74, both hemispheres 334.7
2316 Male, age 76, right hemisphere 327.5
2825 Male, age 18, unknown 324.0
2407 Male, age 75, both hemispheres 318.8
Red nucleus
nTPM: 349.7
1821 Female, age 72, unknown 391.9
2725 Female, age 75, unknown 366.3
2503 Female, age 72, unknown 358.5
2785 Male, age 18, unknown 349.7
1865 Male, age 51, unknown 347.3
1904 Male, age 53, unknown 346.6
2227 Male, age 72, unknown 346.4
2769 Male, age 72, unknown 342.9
2588 Male, age 74, left hemisphere 340.1
2823 Male, age 76, right hemisphere 339.9
1954 Female, age 42, unknown 339.6
2584 Male, age 75, left hemisphere 327.1
Substantia nigra
nTPM: 346.1
1889 Female, age 72, unknown 365.4
1916 Female, age 42, unknown 361.3
1851 Male, age 51, unknown 361.2
2241 Male, age 72, unknown 359.3
1941 Male, age 53, unknown 346.0
2409 Female, age 72, unknown 345.1
2665 Male, age 74, both hemispheres 334.9
2590 Female, age 75, unknown 330.8
2699 Male, age 18, unknown 330.0
2583 Male, age 75, right hemisphere 327.4
Superior colliculus
nTPM: 334.0
2587 Male, age 74, left hemisphere 347.1
1895 Male, age 76, right hemisphere 340.0
2087 Female, age 72, unknown 338.5
2668 Female, age 75, unknown 337.8
1796 Male, age 53, unknown 336.9
2261 Male, age 18, unknown 336.2
1913 Female, age 42, unknown 335.2
1995 Male, age 72, unknown 329.6
1839 Male, age 51, unknown 326.8
2664 Male, age 75, both hemispheres 311.8
Ventral tegmental area
nTPM: 344.3
2410 Female, age 72, unknown 360.8
1915 Female, age 42, unknown 352.6
2223 Female, age 72, unknown 351.7
2218 Male, age 76, both hemispheres 340.2
1942 Male, age 51, unknown 334.9
2021 Male, age 53, unknown 325.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 391.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 391.7
Samples: 139

Max nTPM: 1078.0
Min nTPM: 210.6
Std nTPM: 129.8
Median nTPM: 369.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1078.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 924.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 791.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 740.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 680.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 636.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 611.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 611.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 594.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 584.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 574.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 147.5
FF:10158-103A5 76 years, female 147.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 244.5
Pig sample Sample description nTPM
Midbrain
nTPM: 202.6
Samples: 4

Max nTPM: 254.0
Min nTPM: 167.3
Sample A Female 198.4
Sample B Female 167.3
Sample C Male 254.0
Sample D Male 190.6
Periaqueductal gray
nTPM: 117.5
Samples: 3

Max nTPM: 130.4
Min nTPM: 102.3
Sample B Female 130.4
Sample C Male 119.8
Sample D Male 102.3
Substantia nigra
nTPM: 188.7
Samples: 4

Max nTPM: 286.1
Min nTPM: 128.8
Sample A Female 286.1
Sample B Female 163.0
Sample C Male 176.7
Sample D Male 128.8
Superior colliculi
nTPM: 244.5
Samples: 4

Max nTPM: 322.0
Min nTPM: 175.7
Sample A Female 255.3
Sample B Female 224.8
Sample C Male 322.0
Sample D Male 175.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 509.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 509.7
Samples: 4

Max nTPM: 531.6
Min nTPM: 496.7
Sample A Male 531.6
Sample B Male 496.7
Sample C Female 500.4
Sample D Female 509.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.7
68301443 Antisense, RP_041130_01_C06, Mouse strain C57BL/6J (56 days, male) 6.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.