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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:25.2 nTPM
HPA:25.2 nTPM
GTEx:35.5 nTPM
FANTOM5:29.6 Scaled Tags Per Million
Pig:126.6 nTPM
Mouse:260.4 nTPM
Allen mouse:12.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 25.2
Sample id Sample description nTPM
Amygdala
nTPM: 20.9
2814 Male, age 76, right hemisphere 29.3
2514 Male, age 75, right hemisphere 21.8
1987 Female, age 91, left hemisphere 21.5
2517 Female, age 94, left hemisphere 17.2
2695 Female, age 67, right hemisphere 14.9
Basal amygdala
nTPM: 18.5
1955 Male, age 76, both hemispheres 25.2
2110 Male, age 80, left hemisphere 19.9
2609 Male, age 75, right hemisphere 19.2
2685 Female, age 94, left hemisphere 18.6
2243 Female, age 91, right hemisphere 15.5
2827 Female, age 67, right hemisphere 12.8
Central amygdala
nTPM: 21.5
1905 Male, age 76, both hemispheres 34.2
2239 Male, age 80, left hemisphere 20.8
2515 Male, age 75, right hemisphere 20.6
2701 Female, age 91, right hemisphere 16.8
2826 Female, age 94, left hemisphere 15.3
Corticomedial amygdala
nTPM: 21.0
2429 Female, age 94, left hemisphere 27.3
2240 Male, age 76, both hemispheres 26.7
2428 Male, age 75, right hemisphere 20.8
2242 Female, age 91, right hemisphere 19.8
2829 Male, age 80, left hemisphere 18.9
2535 Female, age 67, right hemisphere 12.6
Lateral amygdala
nTPM: 18.2
1883 Male, age 76, both hemispheres 30.1
2516 Male, age 75, right hemisphere 20.1
2534 Female, age 94, left hemisphere 18.0
2256 Male, age 80, left hemisphere 14.9
2830 Female, age 67, right hemisphere 13.4
2255 Female, age 91, right hemisphere 13.1
Stria terminalis, bed nucleus
nTPM: 25.2
1974 Female, age 91, both hemispheres 29.4
2486 Female, age 94, both hemispheres 26.6
2201 Male, age 74, unknown 19.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 35.5
Samples: 152

Max nTPM: 104.6
Min nTPM: 8.6
Std nTPM: 14.0
Median nTPM: 34.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 104.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 80.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 75.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 67.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 65.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 61.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 60.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 60.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 58.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 55.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 54.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 53.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 53.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 52.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 52.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 52.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 51.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 50.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 50.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 49.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 49.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 48.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 48.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 47.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 47.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 47.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 47.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 47.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 46.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 46.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 45.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 45.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 45.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 44.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 44.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 43.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 43.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 43.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 43.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 43.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 43.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 42.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 42.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 42.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 41.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 40.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 40.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 40.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 40.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 39.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 39.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 39.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 39.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 39.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 39.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 39.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 38.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 38.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 38.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 38.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 37.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 37.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 37.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 37.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 37.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 37.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 36.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 36.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 36.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 36.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 35.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 35.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 35.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 35.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 34.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 34.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 33.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 33.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 33.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 33.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 32.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 32.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 32.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 31.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 31.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 30.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 30.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 30.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 30.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 30.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 29.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 29.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 29.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 29.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 29.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 28.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 28.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 28.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 28.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 27.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 27.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 27.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 27.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 27.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 27.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 26.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 26.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 26.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 26.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 26.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 26.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 26.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 26.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 25.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 25.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 25.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 25.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 25.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 25.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 24.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 23.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 23.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 23.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 23.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 23.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 23.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 22.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 22.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 22.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 22.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 21.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 21.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 20.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 20.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 20.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 20.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 20.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 20.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 19.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 19.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 19.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 18.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 18.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 17.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 17.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 16.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 16.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 15.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 15.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 9.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 9.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 8.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 29.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 29.6
FF:10151-102I7 76 years, female 29.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 126.6
Pig sample Sample description nTPM
Amygdala
nTPM: 126.6
Samples: 4

Max nTPM: 137.3
Min nTPM: 119.6
Sample A Female 119.6
Sample B Female 137.3
Sample C Male 122.8
Sample D Male 126.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 260.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 260.4
Samples: 4

Max nTPM: 263.7
Min nTPM: 256.0
Sample A Male 259.5
Sample B Male 262.3
Sample C Female 256.0
Sample D Female 263.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.3
1745 Antisense, RP_040526_02_D06, Mouse strain C57BL/6J (56 days, male) 13.3
80517057 Antisense, RP_071128_03_B12, Mouse strain C57BL/6J (56 days, male) 11.3

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