BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:0.3 nTPM
HPA:0.3 nTPM
GTEx:0.0 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:1.1 nTPM

CAUDATE - Antibody stainingi
Antibody CAB075697
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.2
1857 Female, age 85, left hemisphere 0.4
1781 Male, age 74, unknown 0.3
2289 Male, age 61, right hemisphere 0.2
1854 Male, age 80, left hemisphere 0.1
2288 Male, age 75, left hemisphere 0.1
2481 Female, age 94, left hemisphere 0.1
2290 Female, age 72, unknown 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 0.2
2292 Female, age 85, both hemispheres 0.8
2284 Female, age 91, both hemispheres 0.4
1956 Male, age 74, unknown 0.2
2198 Male, age 80, both hemispheres 0.2
2196 Female, age 79, unknown 0.1
2491 Male, age 75, both hemispheres 0.1
2645 Female, age 72, unknown 0.1
2392 Female, age 94, both hemispheres 0.0
2568 Male, age 61, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.3
2395 Male, age 75, both hemispheres 0.5
2567 Female, age 72, unknown 0.4
1996 Male, age 80, right hemisphere 0.3
2772 Female, age 79, unknown 0.2
2646 Male, age 61, right hemisphere 0.1
Globus pallidus, internus
nTPM: 0.2
2111 Female, age 85, right hemisphere 0.5
2566 Female, age 72, unknown 0.5
2778 Female, age 91, both hemispheres 0.3
1818 Male, age 74, unknown 0.2
2483 Female, age 94, right hemisphere 0.2
2037 Male, age 80, right hemisphere 0.1
2287 Male, age 75, right hemisphere 0.1
Nucleus accumbens
nTPM: 0.2
2732 Male, age 80, right hemisphere 0.4
2286 Male, age 75, left hemisphere 0.3
2698 Female, age 72, unknown 0.3
2391 Female, age 94, left hemisphere 0.2
2824 Male, age 61, right hemisphere 0.2
1806 Female, age 85, left hemisphere 0.1
1856 Female, age 91, right hemisphere 0.1
1783 Male, age 74, unknown 0.0
Nucleus basalis of Meynert
nTPM: 0.1
2393 Male, age 80, right hemisphere 0.3
2821 Male, age 75, both hemispheres 0.3
2484 Female, age 94, left hemisphere 0.1
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 0.2
1979 Male, age 74, unknown 0.5
2195 Female, age 85, both hemispheres 0.4
1812 Female, age 91, both hemispheres 0.1
2029 Male, age 61, right hemisphere 0.0
2775 Male, age 80, right hemisphere 0.0
Olfactory tubercle
nTPM: 0.2
2487 Female, age 94, left hemisphere 0.4
1846 Male, age 80, right hemisphere 0.2
2856 Male, age 75, right hemisphere 0.2
1998 Female, age 91, both hemispheres 0.1
Putamen
nTPM: 0.2
1838 Male, age 80, right hemisphere 0.4
1937 Female, age 91, right hemisphere 0.3
2466 Female, age 79, unknown 0.3
2489 Female, age 72, unknown 0.2
1829 Male, age 74, unknown 0.1
2482 Female, age 94, left hemisphere 0.1
2647 Male, age 75, left hemisphere 0.1
Septal nuclei
nTPM: 0.2
2394 Male, age 61, left hemisphere 0.4
1960 Male, age 74, unknown 0.3
2009 Female, age 91, both hemispheres 0.2
2059 Female, age 85, both hemispheres 0.2
2199 Male, age 80, right hemisphere 0.2
2031 Female, age 72, unknown 0.1
2629 Female, age 94, right hemisphere 0.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.0
Samples: 246

Max nTPM: 0.7
Min nTPM: 0.0
Std nTPM: 0.0
Median nTPM: 0.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 0.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 0.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 0.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 0.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 0.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 0.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 0.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 0.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 0.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 0.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 0.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.0
Samples: 246

Max nTPM: 0.5
Min nTPM: 0.0
Std nTPM: 0.0
Median nTPM: 0.0
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 0.5
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 0.5
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 0.4
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 0.3
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 0.3
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 0.3
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 0.3
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 0.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 0.3
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 0.3
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 0.2
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Brain - Putamen (basal ganglia)
Average nTPM: 0.0
Samples: 205

Max nTPM: 0.4
Min nTPM: 0.0
Std nTPM: 0.0
Median nTPM: 0.0
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 0.4
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 0.4
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 0.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 0.3
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 0.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 0.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 0.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 0.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 0.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 0.2
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 0.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.1
Pig sample Sample description nTPM
Caudate
nTPM: 1.0
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.8
Sample A Female 0.8
Sample B Female 1.2
Sample C Male 0.8
Sample D Male 1.1
Putamen
nTPM: 1.2
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.7
Sample A Female 1.5
Sample B Female 1.1
Sample C Male 0.7
Sample D Male 1.3
Septum
nTPM: 0.8
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.4
Sample A Female 0.7
Sample B Female 0.9
Sample C Male 0.4
Sample D Male 1.1
Ventral pallidum
nTPM: 0.9
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.5
Sample A Female 0.9
Sample B Female 1.2
Sample C Male 0.5
Sample D Male 0.8

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The Human Protein Atlas

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