MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:237.7 nTPM
HPA:237.7 nTPM
GTEx:299.3 nTPM
FANTOM5:580.3 Scaled Tags Per Million
Pig:56.8 nTPM
Mouse:89.8 nTPM
Allen mouse:13.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 237.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 216.4
2828 Female, age 72, unknown 236.8
1870 Female, age 42, unknown 233.8
1830 Male, age 51, unknown 229.5
2586 Male, age 75, left hemisphere 224.7
2666 Male, age 74, left hemisphere 223.0
1833 Male, age 53, unknown 221.9
2411 Female, age 72, unknown 212.6
2019 Male, age 18, unknown 206.7
1827 Male, age 72, unknown 193.1
2219 Male, age 76, both hemispheres 181.9
Dorsal raphe nucleus
nTPM: 205.2
2016 Female, age 72, unknown 232.8
1828 Male, age 53, unknown 215.4
2750 Male, age 76, both hemispheres 206.8
2047 Male, age 72, unknown 200.1
2298 Female, age 72, unknown 171.0
Inferior colliculus
nTPM: 192.9
1848 Female, age 42, unknown 202.8
2849 Male, age 72, unknown 197.2
1890 Male, age 53, unknown 196.9
2097 Female, age 72, unknown 174.8
Median raphe nucleus
nTPM: 194.9
2220 Male, age 76, midline 194.9
Pedunculopontine tegmental nucleus
nTPM: 198.4
2334 Male, age 80, both hemispheres 216.2
2338 Male, age 61, both hemispheres 197.9
1921 Female, age 85, both hemispheres 181.0
Periaquaductal grey, anterior
nTPM: 185.3
2502 Female, age 75, unknown 188.6
1947 Male, age 18, unknown 184.5
1795 Male, age 51, unknown 182.8
Periaquaductal grey, dorsal
nTPM: 194.5
2464 Female, age 72, unknown 199.7
2850 Male, age 76, both hemispheres 199.5
1831 Male, age 72, unknown 198.7
1840 Male, age 53, unknown 180.0
Periaquaductal grey, lateral
nTPM: 192.3
2053 Male, age 18, unknown 207.0
2140 Male, age 76, both hemispheres 195.4
2272 Male, age 74, both hemispheres 174.6
Pretectal area
nTPM: 186.7
1815 Male, age 53, unknown 208.3
2407 Male, age 75, both hemispheres 206.2
2316 Male, age 76, right hemisphere 206.1
2825 Male, age 18, unknown 199.2
1817 Female, age 42, unknown 192.8
2224 Female, age 72, unknown 181.0
2273 Male, age 74, both hemispheres 176.0
1944 Female, age 72, unknown 174.7
2007 Male, age 72, unknown 174.4
2667 Female, age 75, unknown 170.6
1816 Male, age 51, unknown 164.1
Red nucleus
nTPM: 237.7
1865 Male, age 51, unknown 258.1
1904 Male, age 53, unknown 250.5
1954 Female, age 42, unknown 250.4
2503 Female, age 72, unknown 247.5
2588 Male, age 74, left hemisphere 243.6
2823 Male, age 76, right hemisphere 241.2
2227 Male, age 72, unknown 238.8
2769 Male, age 72, unknown 237.5
1821 Female, age 72, unknown 232.0
2725 Female, age 75, unknown 223.6
2785 Male, age 18, unknown 219.4
2584 Male, age 75, left hemisphere 209.9
Substantia nigra
nTPM: 205.1
2699 Male, age 18, unknown 229.8
2590 Female, age 75, unknown 218.1
2583 Male, age 75, right hemisphere 215.5
2409 Female, age 72, unknown 215.4
1851 Male, age 51, unknown 211.7
2665 Male, age 74, both hemispheres 209.5
1889 Female, age 72, unknown 193.7
2241 Male, age 72, unknown 193.3
1941 Male, age 53, unknown 184.0
1916 Female, age 42, unknown 179.8
Superior colliculus
nTPM: 208.2
1995 Male, age 72, unknown 252.5
1913 Female, age 42, unknown 250.4
2668 Female, age 75, unknown 219.7
2587 Male, age 74, left hemisphere 209.6
1839 Male, age 51, unknown 203.4
2664 Male, age 75, both hemispheres 198.7
1895 Male, age 76, right hemisphere 195.1
2087 Female, age 72, unknown 189.7
1796 Male, age 53, unknown 185.2
2261 Male, age 18, unknown 177.4
Ventral tegmental area
nTPM: 204.2
2223 Female, age 72, unknown 209.8
2410 Female, age 72, unknown 209.5
2021 Male, age 53, unknown 207.6
1915 Female, age 42, unknown 204.3
1942 Male, age 51, unknown 204.3
2218 Male, age 76, both hemispheres 189.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 299.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 299.3
Samples: 139

Max nTPM: 749.1
Min nTPM: 70.0
Std nTPM: 142.8
Median nTPM: 255.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 749.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 731.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 697.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 640.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 632.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 623.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 603.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 602.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 577.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 543.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 531.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 580.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 580.3
FF:10158-103A5 76 years, female 580.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.8
Pig sample Sample description nTPM
Midbrain
nTPM: 50.8
Samples: 4

Max nTPM: 71.8
Min nTPM: 31.4
Sample A Female 71.8
Sample B Female 42.4
Sample C Male 57.4
Sample D Male 31.4
Periaqueductal gray
nTPM: 37.3
Samples: 3

Max nTPM: 43.4
Min nTPM: 25.8
Sample B Female 42.7
Sample C Male 43.4
Sample D Male 25.8
Substantia nigra
nTPM: 51.2
Samples: 4

Max nTPM: 60.4
Min nTPM: 41.1
Sample A Female 60.4
Sample B Female 41.1
Sample C Male 46.8
Sample D Male 56.5
Superior colliculi
nTPM: 56.8
Samples: 4

Max nTPM: 87.8
Min nTPM: 40.5
Sample A Female 56.6
Sample B Female 42.3
Sample C Male 87.8
Sample D Male 40.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 89.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 89.8
Samples: 4

Max nTPM: 91.1
Min nTPM: 87.1
Sample A Male 87.1
Sample B Male 90.1
Sample C Female 91.1
Sample D Female 90.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.3
79556599 Antisense, RP_071018_02_A06, Mouse strain C57BL/6J (56 days, male) 13.3
79360312 Antisense, RP_071018_02_A06, Mouse strain C57BL/6J (56 days, male) 7.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.