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CSNK1A1
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:57.6 nTPM
GTEx:57.6 nTPM
FANTOM5:56.7 Scaled Tags Per Million
Pig:64.0 nTPM
Mouse:167.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 57.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 57.6
Samples: 105

Max nTPM: 120.4
Min nTPM: 33.9
Std nTPM: 13.9
Median nTPM:
491_1 89 years, female 120.4
490_1 67 years, female 107.5
162_1 79 years, female 84.1
149_1 88 years, male 81.2
495_1 57 years, female 78.8
43_1 64 years, female 78.4
137_1 83 years, male 77.1
308_1 70 years, female 76.8
117_1 61 years, male 76.0
501_1 88 years, male 75.4
42_1 85 years, male 74.2
145_1 84 years, male 72.3
315_1 62 years, female 71.9
307_1 66 years, female 71.5
89_1 63 years, male 71.4
415_1 77 years, female 71.0
4_1 88 years, female 70.7
6_1 73 years, female 70.4
413_1 59 years, female 69.2
466_1 57 years, female 68.8
9_1 66 years, female 68.7
379_1 60 years, male 68.1
109_1 81 years, female 67.1
142_1 61 years, female 66.9
81_1 67 years, male 66.6
139_1 64 years, female 66.2
32_1 67 years, male 66.1
518_1 75 years, female 65.5
126_1 63 years, male 64.9
314_1 67 years, male 64.4
120_1 70 years, female 64.0
347_1 72 years, male 63.8
17_1 71 years, male 63.1
119_1 70 years, female 63.1
526_1 61 years, male 62.4
18_1 88 years, male 61.9
447_1 81 years, male 61.5
173_1 67 years, male 61.3
348_1 84 years, male 61.0
313_1 79 years, female 60.8
217_1 76 years, male 60.2
414_1 84 years, female 60.1
254_1 77 years, female 59.1
115_1 83 years, male 59.0
2_1 77 years, female 58.6
153_1 70 years, female 58.5
468_1 89 years, male 58.1
41_1 94 years, female 58.0
288_1 66 years, female 57.6
396_1 62 years, male 57.1
324_1 76 years, male 56.6
386_1 76 years, male 56.3
316_1 62 years, male 56.1
266_1 85 years, male 55.5
99_1 64 years, male 55.2
499_1 55 years, female 55.1
375_1 74 years, female 54.7
317_1 60 years, male 54.4
389_1 86 years, female 54.3
503_1 68 years, male 54.3
35_1 74 years, female 54.1
335_1 73 years, female 53.2
480_1 63 years, male 53.1
295_1 61 years, female 53.0
351_1 91 years, male 52.8
311_1 78 years, male 51.8
354_1 81 years, female 51.7
517_1 88 years, male 51.6
404_1 82 years, female 51.3
265_1 87 years, male 51.0
349_1 83 years, male 50.8
322_1 76 years, male 50.3
318_1 68 years, male 50.2
452_1 88 years, female 49.2
163_1 78 years, male 49.1
376_1 75 years, female 49.1
291_1 76 years, male 48.8
189_1 76 years, male 48.5
350_1 84 years, female 47.9
251_1 78 years, male 47.8
425_1 59 years, female 47.6
384_1 83 years, male 46.6
237_1 82 years, male 45.2
218_1 71 years, female 44.8
506_1 65 years, male 44.7
321_1 62 years, female 44.3
229_1 69 years, female 43.9
320_1 89 years, female 43.8
406_1 79 years, male 43.8
286_1 68 years, female 43.7
172_1 72 years, female 42.3
292_1 71 years, male 41.5
353_1 82 years, female 41.5
293_1 68 years, female 41.4
243_1 75 years, male 41.3
246_1 77 years, male 41.2
177_1 74 years, male 40.5
319_1 81 years, male 40.4
352_1 62 years, male 40.1
377_1 82 years, female 40.0
264_1 73 years, female 39.3
394_1 75 years, female 38.9
405_1 91 years, male 37.9
355_1 70 years, female 36.5
356_1 87 years, female 33.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 56.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 56.7
FF:10030-101E3 24-65 years, mixed 56.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 64.0
Pig sample Sample description nTPM
Retina
nTPM: 64.0
Samples: 4

Max nTPM: 68.4
Min nTPM: 59.6
Sample A Female 59.6
Sample B Female 66.1
Sample C Male 68.4
Sample D Male 62.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 167.7
Mouse sample Sample description nTPM
Retina
nTPM: 167.7
Samples: 4

Max nTPM: 182.0
Min nTPM: 146.2
Sample A Male 182.0
Sample B Male 146.2
Sample C Female 161.3
Sample D Female 181.4

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.