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FAM162A
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:54.8 nTPM
HPA:54.8 nTPM
GTEx:76.6 nTPM
FANTOM5:109.0 Scaled Tags Per Million
Pig:39.7 nTPM
Mouse:64.4 nTPM
Allen mouse:6.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 54.8
Sample id Sample description nTPM
Amygdala
nTPM: 53.4
2814 Male, age 76, right hemisphere 55.3
2514 Male, age 75, right hemisphere 54.4
1987 Female, age 91, left hemisphere 53.6
2695 Female, age 67, right hemisphere 53.4
2517 Female, age 94, left hemisphere 50.2
Basal amygdala
nTPM: 51.7
2110 Male, age 80, left hemisphere 54.3
2609 Male, age 75, right hemisphere 54.1
2243 Female, age 91, right hemisphere 53.3
1955 Male, age 76, both hemispheres 51.4
2685 Female, age 94, left hemisphere 50.5
2827 Female, age 67, right hemisphere 46.8
Central amygdala
nTPM: 52.2
2239 Male, age 80, left hemisphere 55.0
1905 Male, age 76, both hemispheres 53.8
2701 Female, age 91, right hemisphere 51.9
2515 Male, age 75, right hemisphere 51.8
2826 Female, age 94, left hemisphere 48.4
Corticomedial amygdala
nTPM: 52.8
2829 Male, age 80, left hemisphere 56.7
2242 Female, age 91, right hemisphere 54.9
2429 Female, age 94, left hemisphere 53.6
2240 Male, age 76, both hemispheres 51.9
2428 Male, age 75, right hemisphere 51.5
2535 Female, age 67, right hemisphere 47.9
Lateral amygdala
nTPM: 50.6
1883 Male, age 76, both hemispheres 56.5
2516 Male, age 75, right hemisphere 53.1
2255 Female, age 91, right hemisphere 50.9
2256 Male, age 80, left hemisphere 49.1
2534 Female, age 94, left hemisphere 48.4
2830 Female, age 67, right hemisphere 45.9
Stria terminalis, bed nucleus
nTPM: 54.8
1974 Female, age 91, both hemispheres 55.7
2486 Female, age 94, both hemispheres 55.3
2201 Male, age 74, unknown 53.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 76.6
Samples: 152

Max nTPM: 190.0
Min nTPM: 24.8
Std nTPM: 26.6
Median nTPM: 72.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 190.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 184.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 180.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 166.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 136.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 134.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 128.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 123.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 122.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 117.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 113.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 110.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 108.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 106.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 105.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 105.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 103.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 102.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 102.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 102.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 101.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 100.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 100.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 99.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 98.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 97.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 94.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 92.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 92.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 92.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 92.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 91.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 91.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 89.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 89.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 89.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 87.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 85.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 85.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 85.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 84.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 84.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 84.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 83.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 83.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 83.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 82.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 81.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 81.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 81.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 81.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 80.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 80.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 79.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 79.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 79.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 78.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 78.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 78.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 78.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 77.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 77.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 77.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 77.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 76.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 76.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 76.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 76.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 75.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 75.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 74.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 74.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 73.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 73.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 73.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 72.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 72.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 71.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 71.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 71.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 71.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 71.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 70.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 70.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 70.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 70.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 69.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 68.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 67.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 67.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 66.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 66.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 66.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 66.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 66.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 65.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 65.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 65.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 64.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 64.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 63.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 63.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 63.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 63.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 63.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 62.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 62.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 62.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 62.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 61.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 60.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 60.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 60.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 59.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 59.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 59.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 59.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 59.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 58.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 58.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 57.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 57.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 56.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 56.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 55.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 55.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 54.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 53.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 53.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 52.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 52.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 52.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 50.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 50.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 50.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 48.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 48.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 48.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 48.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 47.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 46.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 45.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 45.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 45.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 44.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 44.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 42.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 40.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 39.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 39.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 37.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 24.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 109.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 109.0
FF:10151-102I7 76 years, female 109.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 39.7
Pig sample Sample description nTPM
Amygdala
nTPM: 39.7
Samples: 4

Max nTPM: 53.1
Min nTPM: 32.4
Sample A Female 53.1
Sample B Female 39.8
Sample C Male 32.4
Sample D Male 33.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 64.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 64.4
Samples: 4

Max nTPM: 69.0
Min nTPM: 61.1
Sample A Male 61.1
Sample B Male 69.0
Sample C Female 64.2
Sample D Female 63.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.1
68341376 Antisense, RP_041207_01_D12, Mouse strain C57BL/6J (56 days, male) 6.1

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