BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:60.2 nTPM
HPA:60.2 nTPM
GTEx:90.5 nTPM
FANTOM5:245.5 Scaled Tags Per Million
Pig:59.2 nTPM
Mouse:75.5 nTPM
Allen mouse:2.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035856
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 60.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.8
1857 Female, age 85, left hemisphere 64.2
1854 Male, age 80, left hemisphere 63.0
2846 Female, age 79, unknown 61.8
2290 Female, age 72, unknown 61.1
2481 Female, age 94, left hemisphere 60.5
2288 Male, age 75, left hemisphere 58.0
1781 Male, age 74, unknown 55.7
2289 Male, age 61, right hemisphere 54.4
Claustrum
nTPM: 52.0
2198 Male, age 80, both hemispheres 53.7
2568 Male, age 61, both hemispheres 53.4
2392 Female, age 94, both hemispheres 53.1
2196 Female, age 79, unknown 52.7
1956 Male, age 74, unknown 52.6
2284 Female, age 91, both hemispheres 51.5
2491 Male, age 75, both hemispheres 51.4
2645 Female, age 72, unknown 50.3
2292 Female, age 85, both hemispheres 48.9
Globus pallidus, externus
nTPM: 53.1
2772 Female, age 79, unknown 56.1
1996 Male, age 80, right hemisphere 55.6
2395 Male, age 75, both hemispheres 54.1
2646 Male, age 61, right hemisphere 51.8
2567 Female, age 72, unknown 47.9
Globus pallidus, internus
nTPM: 53.7
2287 Male, age 75, right hemisphere 57.8
2483 Female, age 94, right hemisphere 57.8
2778 Female, age 91, both hemispheres 54.8
2037 Male, age 80, right hemisphere 54.3
1818 Male, age 74, unknown 53.1
2566 Female, age 72, unknown 49.4
2111 Female, age 85, right hemisphere 48.7
Nucleus accumbens
nTPM: 60.2
1856 Female, age 91, right hemisphere 65.7
2824 Male, age 61, right hemisphere 64.3
1806 Female, age 85, left hemisphere 61.6
2698 Female, age 72, unknown 60.5
2286 Male, age 75, left hemisphere 60.2
1783 Male, age 74, unknown 58.8
2391 Female, age 94, left hemisphere 58.0
2732 Male, age 80, right hemisphere 53.0
Nucleus basalis of Meynert
nTPM: 54.7
2393 Male, age 80, right hemisphere 58.8
2821 Male, age 75, both hemispheres 54.2
2484 Female, age 94, left hemisphere 53.7
2569 Male, age 61, both hemispheres 51.9
Nucleus of the diagonal band
nTPM: 56.8
2775 Male, age 80, right hemisphere 58.7
2195 Female, age 85, both hemispheres 57.4
1812 Female, age 91, both hemispheres 56.3
2029 Male, age 61, right hemisphere 56.1
1979 Male, age 74, unknown 55.7
Olfactory tubercle
nTPM: 54.9
1846 Male, age 80, right hemisphere 58.4
1998 Female, age 91, both hemispheres 56.3
2856 Male, age 75, right hemisphere 52.8
2487 Female, age 94, left hemisphere 51.9
Putamen
nTPM: 57.6
1838 Male, age 80, right hemisphere 63.2
1937 Female, age 91, right hemisphere 61.5
2482 Female, age 94, left hemisphere 59.1
2466 Female, age 79, unknown 58.9
1829 Male, age 74, unknown 57.1
2647 Male, age 75, left hemisphere 52.9
2489 Female, age 72, unknown 50.3
Septal nuclei
nTPM: 55.5
2031 Female, age 72, unknown 59.5
1960 Male, age 74, unknown 58.0
2009 Female, age 91, both hemispheres 56.3
2629 Female, age 94, right hemisphere 55.0
2199 Male, age 80, right hemisphere 53.8
2059 Female, age 85, both hemispheres 53.2
2394 Male, age 61, left hemisphere 52.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 90.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 85.9
Samples: 246

Max nTPM: 195.0
Min nTPM: 40.5
Std nTPM: 24.8
Median nTPM: 84.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 195.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 179.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 171.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 152.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 146.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 146.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 145.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 144.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 143.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 138.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 138.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 90.5
Samples: 246

Max nTPM: 205.1
Min nTPM: 36.9
Std nTPM: 22.7
Median nTPM: 89.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 205.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 163.4
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 158.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 143.4
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 142.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 138.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 137.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 135.9
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 134.9
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 132.0
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 130.0
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Brain - Putamen (basal ganglia)
Average nTPM: 89.1
Samples: 205

Max nTPM: 160.8
Min nTPM: 43.3
Std nTPM: 21.5
Median nTPM: 87.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 160.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 157.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 149.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 143.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 139.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 135.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 134.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 133.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 132.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 131.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 130.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 245.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 139.4
FF:10164-103B2 76 years, female 139.4
Globus pallidus
Scaled Tags Per Million: 179.6
FF:10175-103C4 60 years, female 266.8
FF:10161-103A8 76 years, female 92.5
Nucleus accumbens
Scaled Tags Per Million: 127.7
FF:10037-101F1 23-56 years, mixed 127.7
Putamen
Scaled Tags Per Million: 245.5
FF:10176-103C5 60 years, female 245.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 59.2
Pig sample Sample description nTPM
Caudate
nTPM: 51.3
Samples: 4

Max nTPM: 58.0
Min nTPM: 46.8
Sample A Female 50.7
Sample B Female 49.7
Sample C Male 58.0
Sample D Male 46.8
Putamen
nTPM: 59.2
Samples: 4

Max nTPM: 90.8
Min nTPM: 47.0
Sample A Female 48.5
Sample B Female 47.0
Sample C Male 90.8
Sample D Male 50.4
Septum
nTPM: 57.6
Samples: 4

Max nTPM: 61.6
Min nTPM: 50.6
Sample A Female 61.6
Sample B Female 50.6
Sample C Male 57.1
Sample D Male 61.0
Ventral pallidum
nTPM: 51.4
Samples: 4

Max nTPM: 57.3
Min nTPM: 43.1
Sample A Female 55.0
Sample B Female 57.3
Sample C Male 50.0
Sample D Male 43.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 75.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 75.5
Samples: 4

Max nTPM: 78.0
Min nTPM: 72.9
Sample A Male 72.9
Sample B Male 74.2
Sample C Female 77.0
Sample D Female 78.0
Septum
nTPM: 62.8
Samples: 4

Max nTPM: 72.8
Min nTPM: 54.6
Sample A Male 54.6
Sample B Male 72.8
Sample C Female 62.8
Sample D Female 60.9
Ventral forebrain
nTPM: 68.7
Samples: 4

Max nTPM: 80.4
Min nTPM: 60.5
Sample A Male 68.8
Sample B Male 60.5
Sample C Female 80.4
Sample D Female 65.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.9
68341376 Antisense, RP_041207_01_D12, Mouse strain C57BL/6J (56 days, male) 2.9
Pallidum
Expression energy: 2.5
68341376 Antisense, RP_041207_01_D12, Mouse strain C57BL/6J (56 days, male) 2.5

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