MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:57.2 nTPM
HPA:57.2 nTPM
GTEx:79.4 nTPM
FANTOM5:88.5 Scaled Tags Per Million
Pig:64.1 nTPM
Mouse:69.7 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.2
2411 Female, age 72, unknown 54.3
1870 Female, age 42, unknown 54.2
1833 Male, age 53, unknown 53.0
2019 Male, age 18, unknown 52.9
1827 Male, age 72, unknown 52.6
2828 Female, age 72, unknown 52.6
1830 Male, age 51, unknown 52.0
2666 Male, age 74, left hemisphere 51.1
2586 Male, age 75, left hemisphere 49.6
2219 Male, age 76, both hemispheres 49.4
Dorsal raphe nucleus
nTPM: 54.5
2298 Female, age 72, unknown 55.9
1828 Male, age 53, unknown 55.1
2047 Male, age 72, unknown 55.0
2016 Female, age 72, unknown 54.6
2750 Male, age 76, both hemispheres 52.0
Inferior colliculus
nTPM: 54.8
2097 Female, age 72, unknown 56.0
1848 Female, age 42, unknown 55.5
1890 Male, age 53, unknown 54.5
2849 Male, age 72, unknown 53.2
Median raphe nucleus
nTPM: 57.2
2220 Male, age 76, midline 57.2
Pedunculopontine tegmental nucleus
nTPM: 54.0
1921 Female, age 85, both hemispheres 55.4
2334 Male, age 80, both hemispheres 53.9
2338 Male, age 61, both hemispheres 52.6
Periaquaductal grey, anterior
nTPM: 51.1
1947 Male, age 18, unknown 52.1
1795 Male, age 51, unknown 51.0
2502 Female, age 75, unknown 50.1
Periaquaductal grey, dorsal
nTPM: 52.9
1840 Male, age 53, unknown 55.2
2464 Female, age 72, unknown 52.9
1831 Male, age 72, unknown 52.7
2850 Male, age 76, both hemispheres 50.8
Periaquaductal grey, lateral
nTPM: 51.5
2272 Male, age 74, both hemispheres 52.5
2053 Male, age 18, unknown 51.9
2140 Male, age 76, both hemispheres 49.9
Pretectal area
nTPM: 53.5
2667 Female, age 75, unknown 56.0
1944 Female, age 72, unknown 55.6
1817 Female, age 42, unknown 55.1
2224 Female, age 72, unknown 54.7
2007 Male, age 72, unknown 53.9
2273 Male, age 74, both hemispheres 53.7
1816 Male, age 51, unknown 53.3
2825 Male, age 18, unknown 52.4
1815 Male, age 53, unknown 52.2
2407 Male, age 75, both hemispheres 51.1
2316 Male, age 76, right hemisphere 50.8
Red nucleus
nTPM: 53.7
1821 Female, age 72, unknown 56.8
1954 Female, age 42, unknown 55.5
2823 Male, age 76, right hemisphere 55.0
2725 Female, age 75, unknown 54.8
1865 Male, age 51, unknown 54.2
1904 Male, age 53, unknown 54.0
2769 Male, age 72, unknown 53.7
2588 Male, age 74, left hemisphere 53.4
2503 Female, age 72, unknown 53.3
2227 Male, age 72, unknown 52.8
2785 Male, age 18, unknown 51.3
2584 Male, age 75, left hemisphere 50.0
Substantia nigra
nTPM: 55.6
2241 Male, age 72, unknown 59.8
1916 Female, age 42, unknown 58.2
2409 Female, age 72, unknown 57.9
1889 Female, age 72, unknown 57.6
2699 Male, age 18, unknown 56.3
1851 Male, age 51, unknown 56.2
1941 Male, age 53, unknown 53.4
2665 Male, age 74, both hemispheres 53.3
2590 Female, age 75, unknown 53.1
2583 Male, age 75, right hemisphere 50.7
Superior colliculus
nTPM: 51.6
2087 Female, age 72, unknown 54.1
2587 Male, age 74, left hemisphere 53.0
1796 Male, age 53, unknown 52.0
2261 Male, age 18, unknown 51.7
1895 Male, age 76, right hemisphere 51.6
1913 Female, age 42, unknown 51.4
2668 Female, age 75, unknown 51.4
1839 Male, age 51, unknown 51.3
2664 Male, age 75, both hemispheres 50.0
1995 Male, age 72, unknown 49.4
Ventral tegmental area
nTPM: 54.3
1915 Female, age 42, unknown 56.4
2410 Female, age 72, unknown 55.1
2218 Male, age 76, both hemispheres 54.3
1942 Male, age 51, unknown 53.6
2223 Female, age 72, unknown 53.3
2021 Male, age 53, unknown 53.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.4
Samples: 139

Max nTPM: 147.2
Min nTPM: 42.9
Std nTPM: 18.1
Median nTPM: 77.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 147.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 126.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 122.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 116.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 114.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 114.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 112.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 110.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 110.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 109.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 108.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 88.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.5
FF:10158-103A5 76 years, female 88.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 64.1
Pig sample Sample description nTPM
Midbrain
nTPM: 59.0
Samples: 4

Max nTPM: 69.7
Min nTPM: 53.9
Sample A Female 56.9
Sample B Female 53.9
Sample C Male 69.7
Sample D Male 55.4
Periaqueductal gray
nTPM: 48.8
Samples: 3

Max nTPM: 54.5
Min nTPM: 45.0
Sample B Female 46.9
Sample C Male 54.5
Sample D Male 45.0
Substantia nigra
nTPM: 56.1
Samples: 4

Max nTPM: 81.9
Min nTPM: 37.2
Sample A Female 81.9
Sample B Female 46.7
Sample C Male 58.7
Sample D Male 37.2
Superior colliculi
nTPM: 64.0
Samples: 4

Max nTPM: 79.3
Min nTPM: 51.2
Sample A Female 73.8
Sample B Female 51.8
Sample C Male 79.3
Sample D Male 51.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.7
Samples: 4

Max nTPM: 72.8
Min nTPM: 66.7
Sample A Male 66.7
Sample B Male 72.8
Sample C Female 69.5
Sample D Female 69.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
68341376 Antisense, RP_041207_01_D12, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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