MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:64.8 nTPM
HPA:64.8 nTPM
GTEx:66.6 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:41.2 nTPM
Mouse:0.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.1
2411 Female, age 72, unknown 64.6
2586 Male, age 75, left hemisphere 63.4
1870 Female, age 42, unknown 62.9
2828 Female, age 72, unknown 62.2
1827 Male, age 72, unknown 62.1
2666 Male, age 74, left hemisphere 61.7
1833 Male, age 53, unknown 61.6
2019 Male, age 18, unknown 61.5
1830 Male, age 51, unknown 60.7
2219 Male, age 76, both hemispheres 60.6
Dorsal raphe nucleus
nTPM: 64.7
2298 Female, age 72, unknown 67.9
2047 Male, age 72, unknown 65.5
1828 Male, age 53, unknown 64.2
2750 Male, age 76, both hemispheres 63.5
2016 Female, age 72, unknown 62.6
Inferior colliculus
nTPM: 61.3
2097 Female, age 72, unknown 63.0
1890 Male, age 53, unknown 61.7
1848 Female, age 42, unknown 61.1
2849 Male, age 72, unknown 59.5
Median raphe nucleus
nTPM: 63.5
2220 Male, age 76, midline 63.5
Pedunculopontine tegmental nucleus
nTPM: 61.4
1921 Female, age 85, both hemispheres 62.3
2334 Male, age 80, both hemispheres 61.5
2338 Male, age 61, both hemispheres 60.2
Periaquaductal grey, anterior
nTPM: 63.1
1947 Male, age 18, unknown 63.4
2502 Female, age 75, unknown 63.2
1795 Male, age 51, unknown 62.8
Periaquaductal grey, dorsal
nTPM: 61.7
1840 Male, age 53, unknown 62.6
2464 Female, age 72, unknown 62.4
2850 Male, age 76, both hemispheres 61.7
1831 Male, age 72, unknown 60.1
Periaquaductal grey, lateral
nTPM: 62.0
2053 Male, age 18, unknown 63.0
2272 Male, age 74, both hemispheres 62.5
2140 Male, age 76, both hemispheres 60.6
Pretectal area
nTPM: 62.9
1944 Female, age 72, unknown 64.9
1816 Male, age 51, unknown 64.2
2007 Male, age 72, unknown 64.2
2667 Female, age 75, unknown 64.0
2273 Male, age 74, both hemispheres 63.0
2224 Female, age 72, unknown 62.6
1817 Female, age 42, unknown 62.5
2825 Male, age 18, unknown 62.4
1815 Male, age 53, unknown 62.0
2407 Male, age 75, both hemispheres 61.4
2316 Male, age 76, right hemisphere 60.8
Red nucleus
nTPM: 62.3
1821 Female, age 72, unknown 64.7
1904 Male, age 53, unknown 62.9
1954 Female, age 42, unknown 62.9
2584 Male, age 75, left hemisphere 62.9
2769 Male, age 72, unknown 62.4
2503 Female, age 72, unknown 62.3
2588 Male, age 74, left hemisphere 62.2
1865 Male, age 51, unknown 62.1
2227 Male, age 72, unknown 61.7
2725 Female, age 75, unknown 61.4
2823 Male, age 76, right hemisphere 61.1
2785 Male, age 18, unknown 61.0
Substantia nigra
nTPM: 64.8
1916 Female, age 42, unknown 67.4
2241 Male, age 72, unknown 67.4
1851 Male, age 51, unknown 67.3
1889 Female, age 72, unknown 64.8
2699 Male, age 18, unknown 64.5
2665 Male, age 74, both hemispheres 64.2
1941 Male, age 53, unknown 63.7
2583 Male, age 75, right hemisphere 63.0
2409 Female, age 72, unknown 62.7
2590 Female, age 75, unknown 62.6
Superior colliculus
nTPM: 62.2
2668 Female, age 75, unknown 63.8
2261 Male, age 18, unknown 63.5
1796 Male, age 53, unknown 62.6
1995 Male, age 72, unknown 62.4
2087 Female, age 72, unknown 62.4
2587 Male, age 74, left hemisphere 61.9
1913 Female, age 42, unknown 61.7
2664 Male, age 75, both hemispheres 61.7
1839 Male, age 51, unknown 61.0
1895 Male, age 76, right hemisphere 60.8
Ventral tegmental area
nTPM: 64.4
1915 Female, age 42, unknown 67.1
2410 Female, age 72, unknown 65.0
2021 Male, age 53, unknown 64.3
1942 Male, age 51, unknown 64.2
2223 Female, age 72, unknown 63.7
2218 Male, age 76, both hemispheres 62.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.6
Samples: 139

Max nTPM: 128.4
Min nTPM: 39.2
Std nTPM: 13.5
Median nTPM: 64.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 128.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 104.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 103.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 97.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 91.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 91.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 90.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 88.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 86.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 85.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 85.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.9
FF:10158-103A5 76 years, female 43.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.2
Pig sample Sample description nTPM
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 50.7
Min nTPM: 33.6
Sample A Female 50.7
Sample B Female 46.0
Sample C Male 34.5
Sample D Male 33.6
Periaqueductal gray
nTPM: 33.1
Samples: 3

Max nTPM: 38.1
Min nTPM: 30.6
Sample B Female 38.1
Sample C Male 30.7
Sample D Male 30.6
Substantia nigra
nTPM: 40.5
Samples: 4

Max nTPM: 45.9
Min nTPM: 34.0
Sample A Female 44.1
Sample B Female 34.0
Sample C Male 38.1
Sample D Male 45.9
Superior colliculi
nTPM: 40.3
Samples: 4

Max nTPM: 43.7
Min nTPM: 33.7
Sample A Female 43.7
Sample B Female 33.7
Sample C Male 42.9
Sample D Male 40.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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