MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:25.6 nTPM
HPA:25.6 nTPM
GTEx:31.8 nTPM
FANTOM5:75.9 Scaled Tags Per Million
Pig:21.1 nTPM
Mouse:67.1 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.3
1870 Female, age 42, unknown 26.7
2411 Female, age 72, unknown 26.1
1833 Male, age 53, unknown 25.1
2019 Male, age 18, unknown 24.3
1830 Male, age 51, unknown 23.9
1827 Male, age 72, unknown 23.0
2219 Male, age 76, both hemispheres 22.8
2666 Male, age 74, left hemisphere 22.1
2828 Female, age 72, unknown 21.8
2586 Male, age 75, left hemisphere 17.5
Dorsal raphe nucleus
nTPM: 23.8
2047 Male, age 72, unknown 24.4
1828 Male, age 53, unknown 24.0
2298 Female, age 72, unknown 24.0
2750 Male, age 76, both hemispheres 24.0
2016 Female, age 72, unknown 22.7
Inferior colliculus
nTPM: 24.3
2097 Female, age 72, unknown 26.3
1848 Female, age 42, unknown 24.0
1890 Male, age 53, unknown 23.6
2849 Male, age 72, unknown 23.3
Median raphe nucleus
nTPM: 25.6
2220 Male, age 76, midline 25.6
Pedunculopontine tegmental nucleus
nTPM: 25.6
2334 Male, age 80, both hemispheres 26.8
1921 Female, age 85, both hemispheres 25.0
2338 Male, age 61, both hemispheres 24.9
Periaquaductal grey, anterior
nTPM: 23.3
1947 Male, age 18, unknown 25.1
2502 Female, age 75, unknown 23.5
1795 Male, age 51, unknown 21.4
Periaquaductal grey, dorsal
nTPM: 22.7
2850 Male, age 76, both hemispheres 24.3
1831 Male, age 72, unknown 22.4
1840 Male, age 53, unknown 22.3
2464 Female, age 72, unknown 21.7
Periaquaductal grey, lateral
nTPM: 22.9
2272 Male, age 74, both hemispheres 24.3
2053 Male, age 18, unknown 22.5
2140 Male, age 76, both hemispheres 22.0
Pretectal area
nTPM: 23.6
1817 Female, age 42, unknown 26.3
2273 Male, age 74, both hemispheres 25.3
1944 Female, age 72, unknown 25.1
2224 Female, age 72, unknown 24.4
1815 Male, age 53, unknown 24.3
2667 Female, age 75, unknown 23.9
1816 Male, age 51, unknown 23.7
2007 Male, age 72, unknown 23.7
2825 Male, age 18, unknown 21.9
2316 Male, age 76, right hemisphere 21.5
2407 Male, age 75, both hemispheres 19.5
Red nucleus
nTPM: 24.0
1821 Female, age 72, unknown 27.1
1865 Male, age 51, unknown 26.7
1954 Female, age 42, unknown 26.3
2823 Male, age 76, right hemisphere 25.2
1904 Male, age 53, unknown 24.3
2725 Female, age 75, unknown 24.0
2769 Male, age 72, unknown 23.9
2503 Female, age 72, unknown 23.3
2227 Male, age 72, unknown 23.1
2785 Male, age 18, unknown 22.1
2588 Male, age 74, left hemisphere 21.6
2584 Male, age 75, left hemisphere 19.8
Substantia nigra
nTPM: 24.3
2409 Female, age 72, unknown 27.0
1889 Female, age 72, unknown 26.9
1916 Female, age 42, unknown 25.7
2699 Male, age 18, unknown 25.6
1851 Male, age 51, unknown 24.5
2241 Male, age 72, unknown 24.5
1941 Male, age 53, unknown 24.0
2590 Female, age 75, unknown 22.2
2583 Male, age 75, right hemisphere 21.2
2665 Male, age 74, both hemispheres 21.2
Superior colliculus
nTPM: 22.8
1895 Male, age 76, right hemisphere 25.0
2587 Male, age 74, left hemisphere 24.5
1913 Female, age 42, unknown 24.3
2668 Female, age 75, unknown 23.6
1995 Male, age 72, unknown 23.4
2087 Female, age 72, unknown 22.9
1839 Male, age 51, unknown 22.5
1796 Male, age 53, unknown 22.3
2261 Male, age 18, unknown 22.1
2664 Male, age 75, both hemispheres 17.0
Ventral tegmental area
nTPM: 24.0
2410 Female, age 72, unknown 25.9
2218 Male, age 76, both hemispheres 25.4
2223 Female, age 72, unknown 25.1
1915 Female, age 42, unknown 23.4
1942 Male, age 51, unknown 22.2
2021 Male, age 53, unknown 22.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.8
Samples: 139

Max nTPM: 47.2
Min nTPM: 19.1
Std nTPM: 5.6
Median nTPM: 31.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 47.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 45.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 45.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 44.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 43.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 42.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 42.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 41.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 41.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 40.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 40.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.9
FF:10158-103A5 76 years, female 75.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.1
Pig sample Sample description nTPM
Midbrain
nTPM: 21.1
Samples: 4

Max nTPM: 25.0
Min nTPM: 18.6
Sample A Female 25.0
Sample B Female 20.1
Sample C Male 20.5
Sample D Male 18.6
Periaqueductal gray
nTPM: 16.6
Samples: 3

Max nTPM: 17.7
Min nTPM: 15.9
Sample B Female 15.9
Sample C Male 17.7
Sample D Male 16.2
Substantia nigra
nTPM: 19.6
Samples: 4

Max nTPM: 26.0
Min nTPM: 15.9
Sample A Female 26.0
Sample B Female 15.9
Sample C Male 19.6
Sample D Male 17.0
Superior colliculi
nTPM: 19.6
Samples: 4

Max nTPM: 24.1
Min nTPM: 13.6
Sample A Female 21.6
Sample B Female 13.6
Sample C Male 24.1
Sample D Male 19.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 67.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.1
Samples: 4

Max nTPM: 69.7
Min nTPM: 64.1
Sample A Male 69.7
Sample B Male 69.7
Sample C Female 64.1
Sample D Female 65.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
74581295 Antisense, RP_060215_02_H11, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.