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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1120.2 nTPM
GTEx:1120.2 nTPM
FANTOM5:826.4 Scaled Tags Per Million
Pig:824.6 nTPM
Mouse:15275.1 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA045393
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1120.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 1120.2
Samples: 105

Max nTPM: 2905.6
Min nTPM: 107.1
Std nTPM: 587.5
Median nTPM:
352_1 62 years, male 2905.6
319_1 81 years, male 2476.9
354_1 81 years, female 2386.1
218_1 71 years, female 2369.6
172_1 72 years, female 2243.6
163_1 78 years, male 2096.6
321_1 62 years, female 2087.6
425_1 59 years, female 1965.2
386_1 76 years, male 1911.4
356_1 87 years, female 1898.2
353_1 82 years, female 1857.0
350_1 84 years, female 1845.3
377_1 82 years, female 1749.7
349_1 83 years, male 1745.8
355_1 70 years, female 1743.1
243_1 75 years, male 1727.9
447_1 81 years, male 1694.8
376_1 75 years, female 1677.3
480_1 63 years, male 1676.1
335_1 73 years, female 1666.4
394_1 75 years, female 1662.3
286_1 68 years, female 1650.0
320_1 89 years, female 1627.8
293_1 68 years, female 1621.4
292_1 71 years, male 1621.3
316_1 62 years, male 1618.6
6_1 73 years, female 1611.5
406_1 79 years, male 1585.2
318_1 68 years, male 1581.4
503_1 68 years, male 1578.9
177_1 74 years, male 1457.0
404_1 82 years, female 1417.9
229_1 69 years, female 1394.5
351_1 91 years, male 1394.2
322_1 76 years, male 1389.2
251_1 78 years, male 1388.1
237_1 82 years, male 1382.8
379_1 60 years, male 1355.5
189_1 76 years, male 1338.9
526_1 61 years, male 1332.4
389_1 86 years, female 1331.7
405_1 91 years, male 1302.3
375_1 74 years, female 1293.8
246_1 77 years, male 1272.3
2_1 77 years, female 1226.3
517_1 88 years, male 1203.7
348_1 84 years, male 1163.0
384_1 83 years, male 1072.4
317_1 60 years, male 1070.9
291_1 76 years, male 1070.2
347_1 72 years, male 1059.9
295_1 61 years, female 1038.2
115_1 83 years, male 1019.3
266_1 85 years, male 1018.5
506_1 65 years, male 1017.1
468_1 89 years, male 990.8
264_1 73 years, female 969.4
452_1 88 years, female 959.2
396_1 62 years, male 935.1
265_1 87 years, male 918.6
9_1 66 years, female 910.5
254_1 77 years, female 904.9
153_1 70 years, female 898.2
173_1 67 years, male 881.0
126_1 63 years, male 863.0
217_1 76 years, male 857.7
518_1 75 years, female 838.6
137_1 83 years, male 825.0
145_1 84 years, male 810.9
324_1 76 years, male 809.3
4_1 88 years, female 795.1
311_1 78 years, male 786.9
17_1 71 years, male 778.2
35_1 74 years, female 771.9
499_1 55 years, female 771.0
18_1 88 years, male 681.8
307_1 66 years, female 673.5
81_1 67 years, male 652.4
288_1 66 years, female 651.2
117_1 61 years, male 634.6
120_1 70 years, female 599.9
99_1 64 years, male 573.7
109_1 81 years, female 561.9
314_1 67 years, male 553.7
313_1 79 years, female 542.8
142_1 61 years, female 539.5
43_1 64 years, female 528.4
41_1 94 years, female 508.9
162_1 79 years, female 478.6
32_1 67 years, male 474.8
139_1 64 years, female 460.4
315_1 62 years, female 453.7
415_1 77 years, female 449.1
42_1 85 years, male 432.4
308_1 70 years, female 408.8
495_1 57 years, female 400.2
414_1 84 years, female 385.2
466_1 57 years, female 379.1
119_1 70 years, female 308.9
89_1 63 years, male 263.0
149_1 88 years, male 236.7
490_1 67 years, female 184.9
501_1 88 years, male 179.5
413_1 59 years, female 147.2
491_1 89 years, female 107.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 826.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 826.4
FF:10030-101E3 24-65 years, mixed 826.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 824.6
Pig sample Sample description nTPM
Retina
nTPM: 824.6
Samples: 4

Max nTPM: 1002.3
Min nTPM: 743.2
Sample A Female 805.6
Sample B Female 747.2
Sample C Male 1002.3
Sample D Male 743.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 15275.1
Mouse sample Sample description nTPM
Retina
nTPM: 15275.1
Samples: 4

Max nTPM: 15951.8
Min nTPM: 14636.2
Sample A Male 15951.8
Sample B Male 15085.6
Sample C Female 15426.7
Sample D Female 14636.2

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by the Knut & Alice Wallenberg Foundation.