HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		66.722
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:20.8 nTPM
HPA:20.8 nTPM
GTEx:13.8 nTPM
FANTOM5:35.9 Scaled Tags Per Million
Pig:15.1 nTPM
Mouse:13.1 nTPM
Allen mouse:3.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA009705
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA009705
Hippocampal formation mean intensity 66.722
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 51.815
Molecular layer of the dentate gyrus 36.174
Granular dentate gyrus 11.886
CA1 - oriens layer 21.310
CA1 - pyramidal layer 6.748
CA1 - radiatum layer 25.470
CA2 - oriens layer 19.530
CA2 - pyramidal layer 5.922
CA2 - radiatum layer 18.195
CA3 - oriens layer 15.467
CA3 - pyramidal layer 4.444
CA3 - radiatum layer 22.468
Stratum lucidum 66.722
Lacunosum moleculare 11.972
Subiculum 9.655

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.8
Sample id Sample description nTPM
Hippocampus
nTPM: 10.8
1911 Female, age 85, right hemisphere 15.6
2529 Female, age 94, left hemisphere 12.7
2621 Female, age 67, right hemisphere 11.6
1855 Male, age 76, left hemisphere 8.9
2148 Female, age 91, left hemisphere 8.2
1898 Male, age 80, left hemisphere 7.7
Dentate gyrus
nTPM: 13.1
2530 Female, age 94, left hemisphere 20.8
2246 Female, age 85, both hemispheres 13.9
2010 Male, age 76, both hemispheres 13.2
2528 Male, age 74, both hemispheres 13.0
2531 Female, age 67, both hemispheres 12.5
1927 Female, age 91, both hemispheres 5.0
Entorhinal gyrus
nTPM: 12.2
2117 Female, age 91, right hemisphere 25.3
2764 Male, age 80, right hemisphere 13.1
2686 Male, age 75, right hemisphere 10.3
1938 Female, age 85, left hemisphere 8.9
2613 Female, age 94, left hemisphere 8.6
1787 Male, age 76, left hemisphere 7.0
Hippocampus, CA1
nTPM: 7.6
2082 Female, age 91, right hemisphere 12.5
2527 Male, age 74, both hemispheres 10.3
1873 Female, age 85, both hemispheres 8.6
2045 Male, age 76, both hemispheres 4.1
2749 Male, age 80, left hemisphere 2.5
Hippocampus, CA2
nTPM: 13.1
1963 Male, age 80, left hemisphere 17.0
2437 Female, age 94, left hemisphere 15.9
2113 Female, age 91, right hemisphere 15.0
2249 Male, age 74, both hemispheres 13.9
1940 Female, age 85, left hemisphere 13.4
1892 Male, age 76, both hemispheres 3.6
Hippocampus, CA3
nTPM: 7.8
1891 Female, age 85, both hemispheres 21.3
2436 Male, age 74, both hemispheres 8.5
1867 Male, age 76, both hemispheres 7.6
2861 Female, age 67, both hemispheres 5.3
2137 Male, age 80, left hemisphere 3.0
2620 Female, age 94, left hemisphere 0.9
Parahippocampal cortex
nTPM: 10.4
2692 Male, age 74, both hemispheres 19.4
2532 Female, age 72, left hemisphere 18.5
1990 Female, age 91, right hemisphere 13.0
2018 Male, age 76, both hemispheres 12.2
2693 Female, age 94, both hemispheres 9.7
2245 Female, age 91, both hemispheres 9.3
1850 Male, age 80, both hemispheres 8.5
1933 Female, age 85, both hemispheres 8.3
2250 Female, age 67, right hemisphere 3.4
2622 Female, age 67, right hemisphere 2.0
Perirhinal gyrus
nTPM: 4.5
2521 Female, age 94, right hemisphere 8.4
2848 Male, age 76, right hemisphere 5.5
1794 Male, age 80, right hemisphere 3.1
1847 Female, age 91, left hemisphere 2.8
1841 Female, age 85, right hemisphere 2.6
Subiculum
nTPM: 20.8
2042 Male, age 76, both hemispheres 33.9
1901 Male, age 80, both hemispheres 25.9
2438 Female, age 94, left hemisphere 24.7
1977 Female, age 85, both hemispheres 16.6
2729 Female, age 91, right hemisphere 12.1
2619 Male, age 74, both hemispheres 11.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.8
Samples: 197

Max nTPM: 50.6
Min nTPM: 1.6
Std nTPM: 8.4
Median nTPM: 11.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 50.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 46.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 38.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 36.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 35.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 33.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 32.3
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 31.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 31.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 30.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 30.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.9
FF:10153-102I9 76 years, female 42.5
FF:10169-103B7 60 years, female 29.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 15.1
Samples: 4

Max nTPM: 19.3
Min nTPM: 11.8
Sample A Female 17.1
Sample B Female 11.8
Sample C Male 19.3
Sample D Male 12.0
Entorhinal cortex
nTPM: 10.0
Samples: 4

Max nTPM: 10.6
Min nTPM: 9.4
Sample A Female 10.3
Sample B Female 10.6
Sample C Male 9.8
Sample D Male 9.4
Subiculum
nTPM: 11.4
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.8
Sample A Female 11.7
Sample B Female 12.6
Sample C Male 9.8
Sample D Male 11.6
Ventral hippocampus
nTPM: 12.0
Samples: 4

Max nTPM: 13.2
Min nTPM: 10.7
Sample A Female 12.6
Sample B Female 11.6
Sample C Male 10.7
Sample D Male 13.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 13.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.8
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.1
Sample A Male 9.6
Sample B Male 8.6
Sample C Female 9.8
Sample D Female 7.1
Hippocampal formation
nTPM: 13.1
Samples: 4

Max nTPM: 15.2
Min nTPM: 11.0
Sample A Male 11.0
Sample B Male 13.0
Sample C Female 15.2
Sample D Female 13.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.2
69174541 Antisense, RP_050329_03_A05, Mouse strain C57BL/6J (56 days, male) 3.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.