BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:55.6 nTPM
HPA:55.6 nTPM
GTEx:47.4 nTPM
FANTOM5:21.9 Scaled Tags Per Million
Pig:12.7 nTPM
Mouse:4.9 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA045847
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 55.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 45.8
2290 Female, age 72, unknown 48.3
1781 Male, age 74, unknown 47.6
1854 Male, age 80, left hemisphere 45.9
2481 Female, age 94, left hemisphere 45.5
2288 Male, age 75, left hemisphere 45.4
2846 Female, age 79, unknown 45.4
1857 Female, age 85, left hemisphere 44.4
2289 Male, age 61, right hemisphere 44.3
Claustrum
nTPM: 48.3
2198 Male, age 80, both hemispheres 54.8
2568 Male, age 61, both hemispheres 53.2
2491 Male, age 75, both hemispheres 51.6
2284 Female, age 91, both hemispheres 48.4
2645 Female, age 72, unknown 47.8
2392 Female, age 94, both hemispheres 47.5
2196 Female, age 79, unknown 44.0
1956 Male, age 74, unknown 43.9
2292 Female, age 85, both hemispheres 43.7
Globus pallidus, externus
nTPM: 45.0
2772 Female, age 79, unknown 50.5
2395 Male, age 75, both hemispheres 45.3
2646 Male, age 61, right hemisphere 44.6
1996 Male, age 80, right hemisphere 43.1
2567 Female, age 72, unknown 41.4
Globus pallidus, internus
nTPM: 43.3
2483 Female, age 94, right hemisphere 48.8
1818 Male, age 74, unknown 46.9
2287 Male, age 75, right hemisphere 46.2
2778 Female, age 91, both hemispheres 42.3
2566 Female, age 72, unknown 41.6
2037 Male, age 80, right hemisphere 40.9
2111 Female, age 85, right hemisphere 36.7
Nucleus accumbens
nTPM: 45.9
1856 Female, age 91, right hemisphere 51.4
2286 Male, age 75, left hemisphere 48.1
2824 Male, age 61, right hemisphere 47.9
1783 Male, age 74, unknown 47.2
1806 Female, age 85, left hemisphere 44.3
2698 Female, age 72, unknown 44.3
2732 Male, age 80, right hemisphere 43.3
2391 Female, age 94, left hemisphere 40.8
Nucleus basalis of Meynert
nTPM: 45.9
2569 Male, age 61, both hemispheres 47.2
2484 Female, age 94, left hemisphere 46.7
2821 Male, age 75, both hemispheres 45.7
2393 Male, age 80, right hemisphere 43.9
Nucleus of the diagonal band
nTPM: 55.2
2775 Male, age 80, right hemisphere 60.7
1812 Female, age 91, both hemispheres 59.4
2029 Male, age 61, right hemisphere 57.2
2195 Female, age 85, both hemispheres 53.6
1979 Male, age 74, unknown 44.9
Olfactory tubercle
nTPM: 55.6
1846 Male, age 80, right hemisphere 59.8
1998 Female, age 91, both hemispheres 58.1
2487 Female, age 94, left hemisphere 54.9
2856 Male, age 75, right hemisphere 49.6
Putamen
nTPM: 46.1
2466 Female, age 79, unknown 49.9
1937 Female, age 91, right hemisphere 47.2
1838 Male, age 80, right hemisphere 46.3
2647 Male, age 75, left hemisphere 46.3
2482 Female, age 94, left hemisphere 45.2
1829 Male, age 74, unknown 43.9
2489 Female, age 72, unknown 43.9
Septal nuclei
nTPM: 51.4
2031 Female, age 72, unknown 59.5
1960 Male, age 74, unknown 58.9
2009 Female, age 91, both hemispheres 55.3
2629 Female, age 94, right hemisphere 50.2
2059 Female, age 85, both hemispheres 49.6
2394 Male, age 61, left hemisphere 45.2
2199 Male, age 80, right hemisphere 41.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.9
Samples: 246

Max nTPM: 70.0
Min nTPM: 21.0
Std nTPM: 7.0
Median nTPM: 42.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 70.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 62.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 62.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 62.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 59.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 57.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 57.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 56.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 56.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 55.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 55.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 47.4
Samples: 246

Max nTPM: 80.7
Min nTPM: 19.6
Std nTPM: 8.1
Median nTPM: 48.0
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 80.7
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 70.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 63.9
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 61.4
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 61.4
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 61.3
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 60.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 60.2
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 59.9
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 59.7
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 59.4
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Brain - Putamen (basal ganglia)
Average nTPM: 42.0
Samples: 205

Max nTPM: 59.9
Min nTPM: 25.6
Std nTPM: 6.4
Median nTPM: 42.3
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 59.9
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 55.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 55.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 55.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 54.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 54.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 54.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 54.0
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 52.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 52.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 51.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.5
FF:10164-103B2 76 years, female 13.5
Globus pallidus
Scaled Tags Per Million: 9.3
FF:10175-103C4 60 years, female 14.2
FF:10161-103A8 76 years, female 4.5
Nucleus accumbens
Scaled Tags Per Million: 21.9
FF:10037-101F1 23-56 years, mixed 21.9
Putamen
Scaled Tags Per Million: 13.9
FF:10176-103C5 60 years, female 13.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.7
Pig sample Sample description nTPM
Caudate
nTPM: 9.3
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.2
Sample A Female 8.2
Sample B Female 10.6
Sample C Male 9.3
Sample D Male 9.1
Putamen
nTPM: 8.8
Samples: 4

Max nTPM: 10.6
Min nTPM: 6.9
Sample A Female 10.6
Sample B Female 6.9
Sample C Male 8.8
Sample D Male 9.0
Septum
nTPM: 12.7
Samples: 4

Max nTPM: 16.6
Min nTPM: 10.7
Sample A Female 11.6
Sample B Female 11.8
Sample C Male 16.6
Sample D Male 10.7
Ventral pallidum
nTPM: 10.7
Samples: 4

Max nTPM: 15.0
Min nTPM: 7.8
Sample A Female 7.8
Sample B Female 10.9
Sample C Male 15.0
Sample D Male 9.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.7
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.2
Sample A Male 3.1
Sample B Male 2.8
Sample C Female 2.5
Sample D Female 2.2
Septum
nTPM: 5.0
Samples: 4

Max nTPM: 6.3
Min nTPM: 3.4
Sample A Male 6.1
Sample B Male 3.4
Sample C Female 6.3
Sample D Female 4.0
Ventral forebrain
nTPM: 4.5
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.5
Sample A Male 4.6
Sample B Male 5.4
Sample C Female 4.3
Sample D Female 3.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68301843 Antisense, RP_041130_01_H09, Mouse strain C57BL/6J (56 days, male) 0.2
73512484 Antisense, RP_051017_02_D03, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.3
68301843 Antisense, RP_041130_01_H09, Mouse strain C57BL/6J (56 days, male) 0.5
73512484 Antisense, RP_051017_02_D03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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