BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:90.5 nTPM
HPA:90.5 nTPM
GTEx:111.4 nTPM
FANTOM5:458.8 Scaled Tags Per Million
Pig:92.1 nTPM
Mouse:156.9 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 90.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 89.1
2288 Male, age 75, left hemisphere 99.7
2846 Female, age 79, unknown 96.8
2481 Female, age 94, left hemisphere 93.2
1781 Male, age 74, unknown 89.2
2290 Female, age 72, unknown 87.4
1857 Female, age 85, left hemisphere 85.3
1854 Male, age 80, left hemisphere 81.3
2289 Male, age 61, right hemisphere 79.8
Claustrum
nTPM: 82.2
2198 Male, age 80, both hemispheres 88.9
2392 Female, age 94, both hemispheres 86.1
2284 Female, age 91, both hemispheres 83.5
1956 Male, age 74, unknown 83.0
2292 Female, age 85, both hemispheres 82.7
2491 Male, age 75, both hemispheres 81.1
2196 Female, age 79, unknown 79.6
2568 Male, age 61, both hemispheres 78.0
2645 Female, age 72, unknown 77.1
Globus pallidus, externus
nTPM: 80.7
2772 Female, age 79, unknown 94.2
2395 Male, age 75, both hemispheres 84.5
1996 Male, age 80, right hemisphere 81.7
2567 Female, age 72, unknown 72.6
2646 Male, age 61, right hemisphere 70.6
Globus pallidus, internus
nTPM: 85.8
2287 Male, age 75, right hemisphere 97.0
1818 Male, age 74, unknown 92.3
2483 Female, age 94, right hemisphere 86.9
2778 Female, age 91, both hemispheres 86.8
2037 Male, age 80, right hemisphere 84.8
2111 Female, age 85, right hemisphere 76.5
2566 Female, age 72, unknown 76.4
Nucleus accumbens
nTPM: 90.5
1856 Female, age 91, right hemisphere 101.9
2698 Female, age 72, unknown 95.3
2286 Male, age 75, left hemisphere 92.3
1783 Male, age 74, unknown 90.9
1806 Female, age 85, left hemisphere 90.8
2391 Female, age 94, left hemisphere 88.3
2824 Male, age 61, right hemisphere 88.2
2732 Male, age 80, right hemisphere 76.3
Nucleus basalis of Meynert
nTPM: 78.5
2821 Male, age 75, both hemispheres 87.5
2484 Female, age 94, left hemisphere 80.0
2393 Male, age 80, right hemisphere 78.5
2569 Male, age 61, both hemispheres 68.2
Nucleus of the diagonal band
nTPM: 89.1
1812 Female, age 91, both hemispheres 95.7
2775 Male, age 80, right hemisphere 91.9
2195 Female, age 85, both hemispheres 89.1
2029 Male, age 61, right hemisphere 86.0
1979 Male, age 74, unknown 82.6
Olfactory tubercle
nTPM: 86.7
1998 Female, age 91, both hemispheres 89.9
1846 Male, age 80, right hemisphere 87.2
2856 Male, age 75, right hemisphere 87.2
2487 Female, age 94, left hemisphere 82.6
Putamen
nTPM: 84.1
1937 Female, age 91, right hemisphere 91.4
1838 Male, age 80, right hemisphere 90.3
2466 Female, age 79, unknown 89.3
2482 Female, age 94, left hemisphere 87.6
1829 Male, age 74, unknown 85.0
2489 Female, age 72, unknown 73.0
2647 Male, age 75, left hemisphere 72.4
Septal nuclei
nTPM: 85.6
2031 Female, age 72, unknown 97.1
2629 Female, age 94, right hemisphere 95.8
1960 Male, age 74, unknown 89.1
2009 Female, age 91, both hemispheres 86.8
2394 Male, age 61, left hemisphere 78.5
2199 Male, age 80, right hemisphere 76.2
2059 Female, age 85, both hemispheres 75.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 111.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 86.6
Samples: 246

Max nTPM: 201.0
Min nTPM: 45.0
Std nTPM: 25.3
Median nTPM: 83.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 201.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 173.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 163.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 159.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 149.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 145.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 145.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 143.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 141.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 140.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 137.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 111.4
Samples: 246

Max nTPM: 206.6
Min nTPM: 44.1
Std nTPM: 33.3
Median nTPM: 110.9
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 206.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 203.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 201.0
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 196.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 190.2
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 184.2
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 181.6
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 180.9
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 180.5
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 175.3
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 172.1
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Brain - Putamen (basal ganglia)
Average nTPM: 90.9
Samples: 205

Max nTPM: 204.4
Min nTPM: 49.2
Std nTPM: 24.5
Median nTPM: 87.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 204.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 173.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 161.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 159.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 148.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 142.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 141.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 137.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 137.1
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 131.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 131.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 458.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 419.0
FF:10164-103B2 76 years, female 419.0
Globus pallidus
Scaled Tags Per Million: 458.8
FF:10175-103C4 60 years, female 670.1
FF:10161-103A8 76 years, female 247.5
Nucleus accumbens
Scaled Tags Per Million: 318.1
FF:10037-101F1 23-56 years, mixed 318.1
Putamen
Scaled Tags Per Million: 452.3
FF:10176-103C5 60 years, female 452.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 92.1
Pig sample Sample description nTPM
Caudate
nTPM: 78.4
Samples: 4

Max nTPM: 89.2
Min nTPM: 72.3
Sample A Female 75.7
Sample B Female 76.5
Sample C Male 89.2
Sample D Male 72.3
Putamen
nTPM: 87.8
Samples: 4

Max nTPM: 115.3
Min nTPM: 69.6
Sample A Female 74.2
Sample B Female 69.6
Sample C Male 115.3
Sample D Male 92.2
Septum
nTPM: 92.1
Samples: 4

Max nTPM: 110.3
Min nTPM: 81.9
Sample A Female 90.1
Sample B Female 81.9
Sample C Male 110.3
Sample D Male 86.1
Ventral pallidum
nTPM: 79.0
Samples: 4

Max nTPM: 86.3
Min nTPM: 73.8
Sample A Female 78.3
Sample B Female 77.7
Sample C Male 86.3
Sample D Male 73.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 156.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 124.6
Samples: 4

Max nTPM: 136.5
Min nTPM: 114.1
Sample A Male 114.1
Sample B Male 118.0
Sample C Female 129.7
Sample D Female 136.5
Septum
nTPM: 156.9
Samples: 4

Max nTPM: 172.7
Min nTPM: 151.1
Sample A Male 151.5
Sample B Male 152.3
Sample C Female 172.7
Sample D Female 151.1
Ventral forebrain
nTPM: 156.6
Samples: 4

Max nTPM: 165.4
Min nTPM: 149.2
Sample A Male 156.8
Sample B Male 155.0
Sample C Female 165.4
Sample D Female 149.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
75651231 Antisense, RP_060518_01_D09, Mouse strain C57BL/6J (56 days, male) 0.4
74357596 Antisense, RP_060117_01_A11, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.3
75651231 Antisense, RP_060518_01_D09, Mouse strain C57BL/6J (56 days, male) 0.5
74357596 Antisense, RP_060117_01_A11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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