MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.9 nTPM
HPA:39.9 nTPM
GTEx:46.9 nTPM
FANTOM5:192.5 Scaled Tags Per Million
Pig:38.1 nTPM
Mouse:107.4 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.1
2019 Male, age 18, unknown 40.4
1827 Male, age 72, unknown 39.9
2828 Female, age 72, unknown 39.8
2411 Female, age 72, unknown 39.2
1870 Female, age 42, unknown 38.1
2666 Male, age 74, left hemisphere 34.6
1833 Male, age 53, unknown 34.2
1830 Male, age 51, unknown 33.5
2586 Male, age 75, left hemisphere 32.5
2219 Male, age 76, both hemispheres 29.2
Dorsal raphe nucleus
nTPM: 38.4
2298 Female, age 72, unknown 42.7
2750 Male, age 76, both hemispheres 38.7
2016 Female, age 72, unknown 37.5
1828 Male, age 53, unknown 37.0
2047 Male, age 72, unknown 35.9
Inferior colliculus
nTPM: 37.6
2097 Female, age 72, unknown 41.5
1890 Male, age 53, unknown 39.4
1848 Female, age 42, unknown 36.6
2849 Male, age 72, unknown 32.9
Median raphe nucleus
nTPM: 39.5
2220 Male, age 76, midline 39.5
Pedunculopontine tegmental nucleus
nTPM: 38.1
2334 Male, age 80, both hemispheres 40.0
2338 Male, age 61, both hemispheres 37.3
1921 Female, age 85, both hemispheres 36.8
Periaquaductal grey, anterior
nTPM: 35.9
1795 Male, age 51, unknown 36.9
2502 Female, age 75, unknown 36.5
1947 Male, age 18, unknown 34.3
Periaquaductal grey, dorsal
nTPM: 36.7
2850 Male, age 76, both hemispheres 38.0
1831 Male, age 72, unknown 37.2
1840 Male, age 53, unknown 35.8
2464 Female, age 72, unknown 35.8
Periaquaductal grey, lateral
nTPM: 35.5
2053 Male, age 18, unknown 36.4
2272 Male, age 74, both hemispheres 35.6
2140 Male, age 76, both hemispheres 34.3
Pretectal area
nTPM: 39.9
1817 Female, age 42, unknown 47.1
1816 Male, age 51, unknown 45.7
1944 Female, age 72, unknown 44.3
1815 Male, age 53, unknown 42.3
2007 Male, age 72, unknown 40.6
2667 Female, age 75, unknown 40.0
2273 Male, age 74, both hemispheres 39.3
2316 Male, age 76, right hemisphere 37.2
2224 Female, age 72, unknown 36.7
2825 Male, age 18, unknown 34.6
2407 Male, age 75, both hemispheres 31.4
Red nucleus
nTPM: 37.4
1821 Female, age 72, unknown 40.7
2503 Female, age 72, unknown 40.0
2725 Female, age 75, unknown 39.4
1865 Male, age 51, unknown 38.8
1904 Male, age 53, unknown 38.6
2785 Male, age 18, unknown 38.4
1954 Female, age 42, unknown 36.9
2823 Male, age 76, right hemisphere 36.9
2227 Male, age 72, unknown 35.8
2769 Male, age 72, unknown 35.5
2584 Male, age 75, left hemisphere 34.8
2588 Male, age 74, left hemisphere 33.3
Substantia nigra
nTPM: 38.2
1889 Female, age 72, unknown 44.7
2241 Male, age 72, unknown 40.3
1851 Male, age 51, unknown 38.9
2590 Female, age 75, unknown 38.9
2665 Male, age 74, both hemispheres 38.6
2409 Female, age 72, unknown 37.9
1916 Female, age 42, unknown 37.4
1941 Male, age 53, unknown 35.7
2583 Male, age 75, right hemisphere 35.5
2699 Male, age 18, unknown 34.6
Superior colliculus
nTPM: 37.2
2261 Male, age 18, unknown 41.0
1913 Female, age 42, unknown 40.8
1995 Male, age 72, unknown 40.5
2087 Female, age 72, unknown 40.5
2587 Male, age 74, left hemisphere 39.5
1796 Male, age 53, unknown 38.9
1895 Male, age 76, right hemisphere 33.8
2668 Female, age 75, unknown 33.4
1839 Male, age 51, unknown 32.6
2664 Male, age 75, both hemispheres 31.0
Ventral tegmental area
nTPM: 37.8
2410 Female, age 72, unknown 43.2
2218 Male, age 76, both hemispheres 37.7
2223 Female, age 72, unknown 36.9
1942 Male, age 51, unknown 36.7
2021 Male, age 53, unknown 36.5
1915 Female, age 42, unknown 35.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.9
Samples: 139

Max nTPM: 104.7
Min nTPM: 25.9
Std nTPM: 12.5
Median nTPM: 44.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 104.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 98.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 81.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 76.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 72.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 72.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 71.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 68.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 67.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 66.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 62.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 192.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 192.5
FF:10158-103A5 76 years, female 192.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.1
Pig sample Sample description nTPM
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 51.1
Min nTPM: 29.5
Sample A Female 51.1
Sample B Female 38.0
Sample C Male 29.5
Sample D Male 33.9
Periaqueductal gray
nTPM: 36.7
Samples: 3

Max nTPM: 37.2
Min nTPM: 35.9
Sample B Female 35.9
Sample C Male 37.0
Sample D Male 37.2
Substantia nigra
nTPM: 38.1
Samples: 4

Max nTPM: 41.9
Min nTPM: 34.0
Sample A Female 38.5
Sample B Female 34.0
Sample C Male 38.0
Sample D Male 41.9
Superior colliculi
nTPM: 34.8
Samples: 4

Max nTPM: 35.6
Min nTPM: 33.1
Sample A Female 35.6
Sample B Female 35.1
Sample C Male 33.1
Sample D Male 35.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 107.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 107.4
Samples: 4

Max nTPM: 110.7
Min nTPM: 105.1
Sample A Male 105.1
Sample B Male 105.6
Sample C Female 110.7
Sample D Female 108.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
68301670 Antisense, RP_041130_01_F04, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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