BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:39.3 nTPM
HPA:39.3 nTPM
GTEx:39.1 nTPM
FANTOM5:171.4 Scaled Tags Per Million
Pig:38.0 nTPM
Mouse:135.1 nTPM
Allen mouse:2.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA014906
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.4
2481 Female, age 94, left hemisphere 43.2
2288 Male, age 75, left hemisphere 37.0
1857 Female, age 85, left hemisphere 36.8
2290 Female, age 72, unknown 35.4
1854 Male, age 80, left hemisphere 35.3
2846 Female, age 79, unknown 33.2
1781 Male, age 74, unknown 32.9
2289 Male, age 61, right hemisphere 29.2
Claustrum
nTPM: 30.7
2392 Female, age 94, both hemispheres 33.4
2196 Female, age 79, unknown 33.0
2198 Male, age 80, both hemispheres 32.8
1956 Male, age 74, unknown 31.5
2491 Male, age 75, both hemispheres 31.5
2292 Female, age 85, both hemispheres 30.2
2568 Male, age 61, both hemispheres 28.9
2284 Female, age 91, both hemispheres 27.7
2645 Female, age 72, unknown 26.9
Globus pallidus, externus
nTPM: 37.6
2772 Female, age 79, unknown 43.7
1996 Male, age 80, right hemisphere 42.3
2395 Male, age 75, both hemispheres 41.0
2646 Male, age 61, right hemisphere 32.4
2567 Female, age 72, unknown 28.8
Globus pallidus, internus
nTPM: 39.3
2287 Male, age 75, right hemisphere 45.0
2483 Female, age 94, right hemisphere 44.5
2778 Female, age 91, both hemispheres 41.3
1818 Male, age 74, unknown 40.4
2037 Male, age 80, right hemisphere 38.1
2111 Female, age 85, right hemisphere 33.7
2566 Female, age 72, unknown 31.8
Nucleus accumbens
nTPM: 35.6
2286 Male, age 75, left hemisphere 39.6
2391 Female, age 94, left hemisphere 37.2
1806 Female, age 85, left hemisphere 35.7
2698 Female, age 72, unknown 35.7
1856 Female, age 91, right hemisphere 35.0
2824 Male, age 61, right hemisphere 34.7
2732 Male, age 80, right hemisphere 34.6
1783 Male, age 74, unknown 31.9
Nucleus basalis of Meynert
nTPM: 35.0
2393 Male, age 80, right hemisphere 37.2
2569 Male, age 61, both hemispheres 35.5
2484 Female, age 94, left hemisphere 34.7
2821 Male, age 75, both hemispheres 32.6
Nucleus of the diagonal band
nTPM: 34.9
1812 Female, age 91, both hemispheres 39.4
2775 Male, age 80, right hemisphere 35.8
2195 Female, age 85, both hemispheres 33.9
1979 Male, age 74, unknown 33.3
2029 Male, age 61, right hemisphere 32.3
Olfactory tubercle
nTPM: 33.5
1846 Male, age 80, right hemisphere 39.2
1998 Female, age 91, both hemispheres 32.9
2856 Male, age 75, right hemisphere 31.8
2487 Female, age 94, left hemisphere 30.2
Putamen
nTPM: 33.8
2482 Female, age 94, left hemisphere 42.5
2466 Female, age 79, unknown 34.6
1838 Male, age 80, right hemisphere 33.8
1829 Male, age 74, unknown 33.7
1937 Female, age 91, right hemisphere 33.7
2489 Female, age 72, unknown 29.8
2647 Male, age 75, left hemisphere 28.7
Septal nuclei
nTPM: 35.2
2031 Female, age 72, unknown 38.1
2199 Male, age 80, right hemisphere 36.2
2394 Male, age 61, left hemisphere 35.9
2009 Female, age 91, both hemispheres 35.4
1960 Male, age 74, unknown 34.2
2059 Female, age 85, both hemispheres 33.8
2629 Female, age 94, right hemisphere 32.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 39.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.1
Samples: 246

Max nTPM: 87.9
Min nTPM: 23.1
Std nTPM: 9.9
Median nTPM: 37.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 87.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 80.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 77.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 73.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 70.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 69.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 63.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 62.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 62.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 62.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 58.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 38.6
Samples: 246

Max nTPM: 145.4
Min nTPM: 17.7
Std nTPM: 11.8
Median nTPM: 36.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 145.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 77.4
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 69.8
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 69.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 69.4
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 66.7
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 66.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 65.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 59.8
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 59.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 59.0
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Brain - Putamen (basal ganglia)
Average nTPM: 38.6
Samples: 205

Max nTPM: 111.2
Min nTPM: 22.8
Std nTPM: 10.2
Median nTPM: 36.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 111.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 74.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 69.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 65.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 64.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 61.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 59.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 57.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 56.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 56.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 56.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 171.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 149.1
FF:10164-103B2 76 years, female 149.1
Globus pallidus
Scaled Tags Per Million: 155.6
FF:10161-103A8 76 years, female 164.4
FF:10175-103C4 60 years, female 146.8
Nucleus accumbens
Scaled Tags Per Million: 171.4
FF:10037-101F1 23-56 years, mixed 171.4
Putamen
Scaled Tags Per Million: 148.9
FF:10176-103C5 60 years, female 148.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 38.0
Pig sample Sample description nTPM
Caudate
nTPM: 34.0
Samples: 4

Max nTPM: 35.2
Min nTPM: 33.0
Sample A Female 33.3
Sample B Female 34.4
Sample C Male 35.2
Sample D Male 33.0
Putamen
nTPM: 35.2
Samples: 4

Max nTPM: 37.1
Min nTPM: 33.4
Sample A Female 36.1
Sample B Female 34.2
Sample C Male 33.4
Sample D Male 37.1
Septum
nTPM: 38.0
Samples: 4

Max nTPM: 39.6
Min nTPM: 36.7
Sample A Female 37.4
Sample B Female 36.7
Sample C Male 39.6
Sample D Male 38.2
Ventral pallidum
nTPM: 35.0
Samples: 4

Max nTPM: 38.5
Min nTPM: 32.3
Sample A Female 35.5
Sample B Female 33.8
Sample C Male 32.3
Sample D Male 38.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 135.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 128.8
Samples: 4

Max nTPM: 130.5
Min nTPM: 127.3
Sample A Male 130.5
Sample B Male 127.3
Sample C Female 128.5
Sample D Female 129.0
Septum
nTPM: 135.1
Samples: 4

Max nTPM: 146.3
Min nTPM: 122.4
Sample A Male 122.4
Sample B Male 146.3
Sample C Female 133.3
Sample D Female 138.4
Ventral forebrain
nTPM: 111.5
Samples: 4

Max nTPM: 120.7
Min nTPM: 106.3
Sample A Male 108.6
Sample B Male 110.5
Sample C Female 120.7
Sample D Female 106.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.8
68301670 Antisense, RP_041130_01_F04, Mouse strain C57BL/6J (56 days, male) 2.8
Pallidum
Expression energy: 1.9
68301670 Antisense, RP_041130_01_F04, Mouse strain C57BL/6J (56 days, male) 1.9

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