We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SPCS1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SPCS1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:75.1 nTPM
HPA:75.1 nTPM
GTEx:114.5 nTPM
FANTOM5:132.9 Scaled Tags Per Million
Pig:31.5 nTPM
Mouse:269.1 nTPM
Allen mouse:9.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 75.1
Sample id Sample description nTPM
Amygdala
nTPM: 75.1
2814 Male, age 76, right hemisphere 81.8
2514 Male, age 75, right hemisphere 77.7
2695 Female, age 67, right hemisphere 74.1
1987 Female, age 91, left hemisphere 72.8
2517 Female, age 94, left hemisphere 69.3
Basal amygdala
nTPM: 70.7
1955 Male, age 76, both hemispheres 73.7
2609 Male, age 75, right hemisphere 73.2
2685 Female, age 94, left hemisphere 72.4
2243 Female, age 91, right hemisphere 72.0
2110 Male, age 80, left hemisphere 71.2
2827 Female, age 67, right hemisphere 61.7
Central amygdala
nTPM: 73.3
1905 Male, age 76, both hemispheres 77.5
2826 Female, age 94, left hemisphere 75.7
2701 Female, age 91, right hemisphere 71.8
2515 Male, age 75, right hemisphere 71.0
2239 Male, age 80, left hemisphere 70.6
Corticomedial amygdala
nTPM: 71.1
2242 Female, age 91, right hemisphere 74.4
2240 Male, age 76, both hemispheres 74.1
2829 Male, age 80, left hemisphere 73.1
2429 Female, age 94, left hemisphere 70.4
2428 Male, age 75, right hemisphere 70.2
2535 Female, age 67, right hemisphere 64.5
Lateral amygdala
nTPM: 70.1
1883 Male, age 76, both hemispheres 77.5
2534 Female, age 94, left hemisphere 73.5
2516 Male, age 75, right hemisphere 72.5
2255 Female, age 91, right hemisphere 68.0
2256 Male, age 80, left hemisphere 66.8
2830 Female, age 67, right hemisphere 62.6
Stria terminalis, bed nucleus
nTPM: 72.4
2201 Male, age 74, unknown 73.9
1974 Female, age 91, both hemispheres 72.7
2486 Female, age 94, both hemispheres 70.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 114.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 114.5
Samples: 152

Max nTPM: 212.5
Min nTPM: 66.6
Std nTPM: 23.6
Median nTPM: 112.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 212.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 210.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 180.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 178.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 176.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 170.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 156.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 155.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 154.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 151.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 148.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 147.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 147.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 145.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 143.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 142.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 140.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 138.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 136.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 135.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 133.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 133.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 132.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 132.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 131.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 131.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 130.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 130.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 129.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 128.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 127.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 127.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 127.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 127.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 126.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 126.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 126.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 125.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 125.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 125.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 124.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 124.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 123.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 122.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 122.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 121.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 121.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 121.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 120.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 119.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 118.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 118.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 117.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 117.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 117.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 117.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 116.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 116.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 116.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 116.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 116.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 115.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 115.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 115.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 115.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 115.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 115.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 114.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 114.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 113.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 113.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 113.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 113.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 113.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 112.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 112.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 111.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 111.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 111.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 111.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 111.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 111.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 111.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 110.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 110.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 109.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 109.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 109.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 109.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 109.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 108.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 108.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 108.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 106.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 106.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 106.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 106.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 106.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 105.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 105.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 105.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 105.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 105.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 105.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 104.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 104.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 104.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 103.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 102.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 102.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 102.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 101.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 101.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 101.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 100.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 100.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 99.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 99.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 99.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 99.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 98.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 95.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 95.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 93.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 93.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 93.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 93.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 92.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 91.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 91.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 91.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 91.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 90.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 90.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 89.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 89.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 89.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 88.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 88.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 87.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 87.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 85.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 82.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 82.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 81.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 79.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 79.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 72.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 72.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 72.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 69.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 66.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 132.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 132.9
FF:10151-102I7 76 years, female 132.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.5
Pig sample Sample description nTPM
Amygdala
nTPM: 31.6
Samples: 4

Max nTPM: 43.3
Min nTPM: 24.6
Sample A Female 43.3
Sample B Female 30.7
Sample C Male 24.6
Sample D Male 27.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 269.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 269.1
Samples: 4

Max nTPM: 279.1
Min nTPM: 262.4
Sample A Male 264.4
Sample B Male 270.6
Sample C Female 262.4
Sample D Female 279.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.0
69262338 Antisense, RP_050303_02_B08, Mouse strain C57BL/6J (56 days, male) 9.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.