BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.6 nTPM
HPA:36.6 nTPM
GTEx:69.9 nTPM
FANTOM5:99.1 Scaled Tags Per Million
Pig:50.6 nTPM
Mouse:13.7 nTPM
Allen mouse:2.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.6
1857 Female, age 85, left hemisphere 44.5
2290 Female, age 72, unknown 44.5
1854 Male, age 80, left hemisphere 38.6
2289 Male, age 61, right hemisphere 37.2
1781 Male, age 74, unknown 33.5
2846 Female, age 79, unknown 31.9
2288 Male, age 75, left hemisphere 26.6
2481 Female, age 94, left hemisphere 19.9
Claustrum
nTPM: 18.9
2568 Male, age 61, both hemispheres 26.4
2645 Female, age 72, unknown 23.4
2284 Female, age 91, both hemispheres 23.0
2491 Male, age 75, both hemispheres 20.9
2198 Male, age 80, both hemispheres 19.9
2196 Female, age 79, unknown 18.7
2392 Female, age 94, both hemispheres 14.3
1956 Male, age 74, unknown 12.2
2292 Female, age 85, both hemispheres 11.1
Globus pallidus, externus
nTPM: 10.0
2646 Male, age 61, right hemisphere 12.4
2567 Female, age 72, unknown 11.6
2772 Female, age 79, unknown 11.5
2395 Male, age 75, both hemispheres 8.0
1996 Male, age 80, right hemisphere 6.6
Globus pallidus, internus
nTPM: 8.4
2483 Female, age 94, right hemisphere 15.3
1818 Male, age 74, unknown 13.0
2566 Female, age 72, unknown 9.7
2037 Male, age 80, right hemisphere 8.3
2111 Female, age 85, right hemisphere 6.0
2287 Male, age 75, right hemisphere 4.7
2778 Female, age 91, both hemispheres 1.9
Nucleus accumbens
nTPM: 36.6
2824 Male, age 61, right hemisphere 57.4
1856 Female, age 91, right hemisphere 55.3
1783 Male, age 74, unknown 50.5
1806 Female, age 85, left hemisphere 40.7
2286 Male, age 75, left hemisphere 30.2
2698 Female, age 72, unknown 29.4
2732 Male, age 80, right hemisphere 15.5
2391 Female, age 94, left hemisphere 14.0
Nucleus basalis of Meynert
nTPM: 26.2
2484 Female, age 94, left hemisphere 33.4
2393 Male, age 80, right hemisphere 28.8
2821 Male, age 75, both hemispheres 24.6
2569 Male, age 61, both hemispheres 18.2
Nucleus of the diagonal band
nTPM: 27.2
2775 Male, age 80, right hemisphere 30.7
2195 Female, age 85, both hemispheres 30.6
2029 Male, age 61, right hemisphere 27.9
1812 Female, age 91, both hemispheres 25.1
1979 Male, age 74, unknown 21.9
Olfactory tubercle
nTPM: 26.7
2487 Female, age 94, left hemisphere 33.7
2856 Male, age 75, right hemisphere 26.1
1998 Female, age 91, both hemispheres 25.0
1846 Male, age 80, right hemisphere 22.0
Putamen
nTPM: 34.7
1838 Male, age 80, right hemisphere 44.1
1937 Female, age 91, right hemisphere 42.6
2647 Male, age 75, left hemisphere 39.1
1829 Male, age 74, unknown 32.7
2489 Female, age 72, unknown 31.2
2466 Female, age 79, unknown 30.5
2482 Female, age 94, left hemisphere 22.6
Septal nuclei
nTPM: 26.0
1960 Male, age 74, unknown 36.2
2059 Female, age 85, both hemispheres 27.4
2629 Female, age 94, right hemisphere 27.1
2394 Male, age 61, left hemisphere 26.3
2009 Female, age 91, both hemispheres 24.6
2031 Female, age 72, unknown 21.2
2199 Male, age 80, right hemisphere 19.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 69.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.5
Samples: 246

Max nTPM: 115.9
Min nTPM: 10.9
Std nTPM: 21.2
Median nTPM: 53.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 115.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 104.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 99.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 99.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 99.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 97.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 97.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 93.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 93.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 92.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 91.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 69.9
Samples: 246

Max nTPM: 137.9
Min nTPM: 3.4
Std nTPM: 26.6
Median nTPM: 73.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 137.9
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 131.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 128.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 123.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 122.8
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 115.5
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 115.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 114.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 113.0
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 111.9
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 110.5
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Brain - Putamen (basal ganglia)
Average nTPM: 50.3
Samples: 205

Max nTPM: 100.7
Min nTPM: 10.2
Std nTPM: 20.6
Median nTPM: 50.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 100.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 95.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 95.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 93.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 93.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 90.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 89.0
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 85.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 84.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 84.5
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 81.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 82.4
FF:10164-103B2 76 years, female 82.4
Globus pallidus
Scaled Tags Per Million: 17.5
FF:10175-103C4 60 years, female 24.4
FF:10161-103A8 76 years, female 10.6
Nucleus accumbens
Scaled Tags Per Million: 88.6
FF:10037-101F1 23-56 years, mixed 88.6
Putamen
Scaled Tags Per Million: 99.1
FF:10176-103C5 60 years, female 99.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 50.6
Pig sample Sample description nTPM
Caudate
nTPM: 50.6
Samples: 4

Max nTPM: 68.8
Min nTPM: 34.3
Sample A Female 34.3
Sample B Female 48.7
Sample C Male 68.8
Sample D Male 50.5
Putamen
nTPM: 45.5
Samples: 4

Max nTPM: 60.5
Min nTPM: 19.8
Sample A Female 19.8
Sample B Female 45.0
Sample C Male 60.5
Sample D Male 56.5
Septum
nTPM: 21.5
Samples: 4

Max nTPM: 25.2
Min nTPM: 12.7
Sample A Female 25.2
Sample B Female 25.0
Sample C Male 22.9
Sample D Male 12.7
Ventral pallidum
nTPM: 33.8
Samples: 4

Max nTPM: 38.4
Min nTPM: 30.5
Sample A Female 34.7
Sample B Female 30.5
Sample C Male 38.4
Sample D Male 31.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 13.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.0
Samples: 4

Max nTPM: 11.0
Min nTPM: 9.0
Sample A Male 9.7
Sample B Male 11.0
Sample C Female 9.0
Sample D Female 10.1
Septum
nTPM: 10.8
Samples: 4

Max nTPM: 13.2
Min nTPM: 7.3
Sample A Male 9.6
Sample B Male 13.0
Sample C Female 13.2
Sample D Female 7.3
Ventral forebrain
nTPM: 13.8
Samples: 4

Max nTPM: 14.8
Min nTPM: 12.1
Sample A Male 14.6
Sample B Male 13.5
Sample C Female 14.8
Sample D Female 12.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.9
69874000 Antisense, RP_050512_02_D10, Mouse strain C57BL/6J (56 days, male) 5.7
74300723 Antisense, RP_051219_03_F08, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 2.6
69874000 Antisense, RP_050512_02_D10, Mouse strain C57BL/6J (56 days, male) 5.3
74300723 Antisense, RP_051219_03_F08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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