BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3.0 nTPM
HPA:3.0 nTPM
GTEx:2.6 nTPM
FANTOM5:52.4 Scaled Tags Per Million
Mouse:37.4 nTPM
Allen mouse:3.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.3
2288 Male, age 75, left hemisphere 3.1
2846 Female, age 79, unknown 3.1
2290 Female, age 72, unknown 2.5
1854 Male, age 80, left hemisphere 2.4
1781 Male, age 74, unknown 2.1
1857 Female, age 85, left hemisphere 2.1
2289 Male, age 61, right hemisphere 2.1
2481 Female, age 94, left hemisphere 0.8
Claustrum
nTPM: 3.0
2292 Female, age 85, both hemispheres 3.8
1956 Male, age 74, unknown 3.4
2392 Female, age 94, both hemispheres 3.2
2568 Male, age 61, both hemispheres 3.0
2645 Female, age 72, unknown 3.0
2284 Female, age 91, both hemispheres 2.8
2491 Male, age 75, both hemispheres 2.8
2198 Male, age 80, both hemispheres 2.5
2196 Female, age 79, unknown 2.4
Globus pallidus, externus
nTPM: 1.9
2567 Female, age 72, unknown 3.4
2395 Male, age 75, both hemispheres 2.3
2646 Male, age 61, right hemisphere 1.5
1996 Male, age 80, right hemisphere 1.3
2772 Female, age 79, unknown 1.0
Globus pallidus, internus
nTPM: 2.3
2111 Female, age 85, right hemisphere 3.6
2566 Female, age 72, unknown 3.1
2287 Male, age 75, right hemisphere 3.0
2483 Female, age 94, right hemisphere 1.9
2778 Female, age 91, both hemispheres 1.9
1818 Male, age 74, unknown 1.6
2037 Male, age 80, right hemisphere 1.3
Nucleus accumbens
nTPM: 2.3
2824 Male, age 61, right hemisphere 3.0
1783 Male, age 74, unknown 2.5
2698 Female, age 72, unknown 2.5
2286 Male, age 75, left hemisphere 2.3
1806 Female, age 85, left hemisphere 2.2
1856 Female, age 91, right hemisphere 2.2
2732 Male, age 80, right hemisphere 2.0
2391 Female, age 94, left hemisphere 1.7
Nucleus basalis of Meynert
nTPM: 1.8
2393 Male, age 80, right hemisphere 2.9
2484 Female, age 94, left hemisphere 1.8
2821 Male, age 75, both hemispheres 1.5
2569 Male, age 61, both hemispheres 1.2
Nucleus of the diagonal band
nTPM: 1.9
2029 Male, age 61, right hemisphere 2.6
2195 Female, age 85, both hemispheres 2.3
2775 Male, age 80, right hemisphere 1.9
1979 Male, age 74, unknown 1.6
1812 Female, age 91, both hemispheres 1.1
Olfactory tubercle
nTPM: 2.3
2487 Female, age 94, left hemisphere 2.9
1998 Female, age 91, both hemispheres 2.5
2856 Male, age 75, right hemisphere 2.2
1846 Male, age 80, right hemisphere 1.6
Putamen
nTPM: 2.8
1829 Male, age 74, unknown 3.6
2466 Female, age 79, unknown 3.2
2489 Female, age 72, unknown 3.1
1838 Male, age 80, right hemisphere 3.0
1937 Female, age 91, right hemisphere 2.7
2647 Male, age 75, left hemisphere 2.1
2482 Female, age 94, left hemisphere 1.5
Septal nuclei
nTPM: 1.8
1960 Male, age 74, unknown 2.3
2629 Female, age 94, right hemisphere 2.1
2009 Female, age 91, both hemispheres 1.7
2394 Male, age 61, left hemisphere 1.7
2031 Female, age 72, unknown 1.6
2059 Female, age 85, both hemispheres 1.5
2199 Male, age 80, right hemisphere 1.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.0
Samples: 246

Max nTPM: 4.5
Min nTPM: 0.8
Std nTPM: 0.5
Median nTPM: 2.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 4.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 4.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 3.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 3.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 3.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 3.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 3.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 3.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 3.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 3.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 3.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.8
Samples: 246

Max nTPM: 4.3
Min nTPM: 0.9
Std nTPM: 0.5
Median nTPM: 1.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 4.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 3.8
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 3.8
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 3.7
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 3.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 3.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 3.3
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 3.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 3.2
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 3.1
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 3.1
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Brain - Putamen (basal ganglia)
Average nTPM: 2.6
Samples: 205

Max nTPM: 6.8
Min nTPM: 1.1
Std nTPM: 0.9
Median nTPM: 2.4
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 6.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 6.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 6.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 5.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 5.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 4.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 4.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 4.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 4.4
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 4.3
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 4.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.3
FF:10164-103B2 76 years, female 32.3
Globus pallidus
Scaled Tags Per Million: 40.2
FF:10175-103C4 60 years, female 42.6
FF:10161-103A8 76 years, female 37.9
Nucleus accumbens
Scaled Tags Per Million: 52.4
FF:10037-101F1 23-56 years, mixed 52.4
Putamen
Scaled Tags Per Million: 31.6
FF:10176-103C5 60 years, female 31.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 37.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.4
Samples: 4

Max nTPM: 38.9
Min nTPM: 36.1
Sample A Male 38.2
Sample B Male 38.9
Sample C Female 36.4
Sample D Female 36.1
Septum
nTPM: 16.2
Samples: 4

Max nTPM: 18.1
Min nTPM: 14.3
Sample A Male 18.1
Sample B Male 14.3
Sample C Female 15.2
Sample D Female 17.1
Ventral forebrain
nTPM: 29.5
Samples: 4

Max nTPM: 31.6
Min nTPM: 27.8
Sample A Male 31.6
Sample B Male 28.7
Sample C Female 27.8
Sample D Female 29.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.5
583871 Antisense, RP_040831_01_C11, Mouse strain C57BL/6J (56 days, male) 3.5
Pallidum
Expression energy: 2.1
583871 Antisense, RP_040831_01_C11, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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