MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.2 nTPM
HPA:16.2 nTPM
GTEx:9.0 nTPM
FANTOM5:15.5 Scaled Tags Per Million
Pig:53.2 nTPM
Mouse:34.8 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.0
2586 Male, age 75, left hemisphere 12.5
1870 Female, age 42, unknown 12.4
2411 Female, age 72, unknown 12.4
1827 Male, age 72, unknown 12.0
1833 Male, age 53, unknown 11.8
2219 Male, age 76, both hemispheres 11.3
2828 Female, age 72, unknown 11.3
1830 Male, age 51, unknown 10.2
2666 Male, age 74, left hemisphere 9.6
2019 Male, age 18, unknown 6.7
Dorsal raphe nucleus
nTPM: 13.9
2047 Male, age 72, unknown 16.3
1828 Male, age 53, unknown 14.1
2298 Female, age 72, unknown 13.9
2016 Female, age 72, unknown 13.3
2750 Male, age 76, both hemispheres 11.9
Inferior colliculus
nTPM: 16.2
2097 Female, age 72, unknown 18.0
1890 Male, age 53, unknown 16.3
2849 Male, age 72, unknown 15.2
1848 Female, age 42, unknown 15.1
Median raphe nucleus
nTPM: 11.9
2220 Male, age 76, midline 11.9
Pedunculopontine tegmental nucleus
nTPM: 12.7
1921 Female, age 85, both hemispheres 13.4
2334 Male, age 80, both hemispheres 12.6
2338 Male, age 61, both hemispheres 12.1
Periaquaductal grey, anterior
nTPM: 10.0
1947 Male, age 18, unknown 12.0
1795 Male, age 51, unknown 9.5
2502 Female, age 75, unknown 8.4
Periaquaductal grey, dorsal
nTPM: 12.7
1840 Male, age 53, unknown 15.3
2464 Female, age 72, unknown 13.0
2850 Male, age 76, both hemispheres 12.0
1831 Male, age 72, unknown 10.4
Periaquaductal grey, lateral
nTPM: 11.2
2053 Male, age 18, unknown 13.4
2140 Male, age 76, both hemispheres 10.9
2272 Male, age 74, both hemispheres 9.3
Pretectal area
nTPM: 10.7
2825 Male, age 18, unknown 15.0
2224 Female, age 72, unknown 13.0
1817 Female, age 42, unknown 11.4
1944 Female, age 72, unknown 10.9
2273 Male, age 74, both hemispheres 10.6
2667 Female, age 75, unknown 10.3
1816 Male, age 51, unknown 10.0
2316 Male, age 76, right hemisphere 9.8
2007 Male, age 72, unknown 8.8
2407 Male, age 75, both hemispheres 8.8
1815 Male, age 53, unknown 8.7
Red nucleus
nTPM: 11.4
1821 Female, age 72, unknown 13.8
2725 Female, age 75, unknown 13.7
2503 Female, age 72, unknown 13.5
2823 Male, age 76, right hemisphere 12.1
2769 Male, age 72, unknown 11.9
1954 Female, age 42, unknown 11.6
2227 Male, age 72, unknown 11.5
1865 Male, age 51, unknown 11.3
1904 Male, age 53, unknown 10.8
2588 Male, age 74, left hemisphere 10.6
2584 Male, age 75, left hemisphere 9.1
2785 Male, age 18, unknown 6.8
Substantia nigra
nTPM: 13.3
1916 Female, age 42, unknown 16.0
2699 Male, age 18, unknown 15.8
2241 Male, age 72, unknown 15.3
1851 Male, age 51, unknown 13.4
2665 Male, age 74, both hemispheres 13.0
1889 Female, age 72, unknown 12.9
2583 Male, age 75, right hemisphere 11.7
2590 Female, age 75, unknown 11.6
1941 Male, age 53, unknown 11.4
2409 Female, age 72, unknown 11.4
Superior colliculus
nTPM: 10.5
1839 Male, age 51, unknown 12.0
1895 Male, age 76, right hemisphere 11.8
2668 Female, age 75, unknown 11.6
1796 Male, age 53, unknown 11.1
2587 Male, age 74, left hemisphere 10.9
2261 Male, age 18, unknown 10.8
2087 Female, age 72, unknown 10.2
1995 Male, age 72, unknown 9.7
1913 Female, age 42, unknown 8.7
2664 Male, age 75, both hemispheres 8.7
Ventral tegmental area
nTPM: 12.9
2410 Female, age 72, unknown 13.6
1915 Female, age 42, unknown 13.5
2021 Male, age 53, unknown 13.0
1942 Male, age 51, unknown 12.9
2223 Female, age 72, unknown 12.9
2218 Male, age 76, both hemispheres 11.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.0
Samples: 139

Max nTPM: 20.1
Min nTPM: 4.6
Std nTPM: 2.5
Median nTPM: 8.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 20.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 19.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 14.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 14.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 14.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 14.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 13.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 13.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 13.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 13.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.5
FF:10158-103A5 76 years, female 15.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.2
Pig sample Sample description nTPM
Midbrain
nTPM: 53.2
Samples: 4

Max nTPM: 61.7
Min nTPM: 37.0
Sample A Female 61.7
Sample B Female 55.0
Sample C Male 59.0
Sample D Male 37.0
Periaqueductal gray
nTPM: 45.2
Samples: 3

Max nTPM: 53.1
Min nTPM: 40.1
Sample B Female 53.1
Sample C Male 42.5
Sample D Male 40.1
Substantia nigra
nTPM: 45.8
Samples: 4

Max nTPM: 50.5
Min nTPM: 39.2
Sample A Female 50.5
Sample B Female 39.2
Sample C Male 47.4
Sample D Male 46.1
Superior colliculi
nTPM: 41.7
Samples: 4

Max nTPM: 51.7
Min nTPM: 28.0
Sample A Female 41.5
Sample B Female 28.0
Sample C Male 51.7
Sample D Male 45.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.8
Samples: 4

Max nTPM: 36.0
Min nTPM: 32.6
Sample A Male 32.6
Sample B Male 35.6
Sample C Female 34.8
Sample D Female 36.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70615598 Antisense, RP_050725_01_D06, Mouse strain C57BL/6J (56 days, male) 1.8
75749419 Antisense, RP_060518_04_E03, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.