BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:54.6 nTPM
HPA:54.6 nTPM
GTEx:50.8 nTPM
FANTOM5:32.4 Scaled Tags Per Million
Pig:8.8 nTPM
Mouse:67.8 nTPM
Allen mouse:6.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA051804Antibody HPA063581
Glial cells LowNot detected
Neuronal cells Not detectedNot detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 53.6
1781 Male, age 74, unknown 57.2
2290 Female, age 72, unknown 57.1
1854 Male, age 80, left hemisphere 56.9
1857 Female, age 85, left hemisphere 54.4
2846 Female, age 79, unknown 52.1
2481 Female, age 94, left hemisphere 50.7
2288 Male, age 75, left hemisphere 50.6
2289 Male, age 61, right hemisphere 49.5
Claustrum
nTPM: 50.6
2645 Female, age 72, unknown 54.5
2491 Male, age 75, both hemispheres 53.2
2284 Female, age 91, both hemispheres 52.8
2198 Male, age 80, both hemispheres 50.7
2568 Male, age 61, both hemispheres 50.5
1956 Male, age 74, unknown 50.1
2196 Female, age 79, unknown 49.4
2392 Female, age 94, both hemispheres 48.1
2292 Female, age 85, both hemispheres 45.7
Globus pallidus, externus
nTPM: 53.7
1996 Male, age 80, right hemisphere 58.9
2772 Female, age 79, unknown 57.7
2567 Female, age 72, unknown 55.3
2646 Male, age 61, right hemisphere 49.3
2395 Male, age 75, both hemispheres 47.5
Globus pallidus, internus
nTPM: 51.0
2483 Female, age 94, right hemisphere 55.4
2037 Male, age 80, right hemisphere 54.9
1818 Male, age 74, unknown 53.8
2566 Female, age 72, unknown 51.2
2287 Male, age 75, right hemisphere 49.8
2778 Female, age 91, both hemispheres 46.1
2111 Female, age 85, right hemisphere 45.7
Nucleus accumbens
nTPM: 51.7
1783 Male, age 74, unknown 55.5
1856 Female, age 91, right hemisphere 55.4
1806 Female, age 85, left hemisphere 54.2
2732 Male, age 80, right hemisphere 53.5
2286 Male, age 75, left hemisphere 50.5
2698 Female, age 72, unknown 50.2
2824 Male, age 61, right hemisphere 48.7
2391 Female, age 94, left hemisphere 45.8
Nucleus basalis of Meynert
nTPM: 50.7
2393 Male, age 80, right hemisphere 53.6
2569 Male, age 61, both hemispheres 52.6
2484 Female, age 94, left hemisphere 50.7
2821 Male, age 75, both hemispheres 45.8
Nucleus of the diagonal band
nTPM: 52.9
2775 Male, age 80, right hemisphere 55.4
2195 Female, age 85, both hemispheres 54.0
1812 Female, age 91, both hemispheres 53.1
2029 Male, age 61, right hemisphere 52.7
1979 Male, age 74, unknown 49.4
Olfactory tubercle
nTPM: 54.6
1998 Female, age 91, both hemispheres 56.8
2487 Female, age 94, left hemisphere 56.2
2856 Male, age 75, right hemisphere 54.2
1846 Male, age 80, right hemisphere 51.3
Putamen
nTPM: 53.3
2647 Male, age 75, left hemisphere 57.0
1937 Female, age 91, right hemisphere 54.1
2489 Female, age 72, unknown 54.1
1838 Male, age 80, right hemisphere 53.9
2466 Female, age 79, unknown 52.2
1829 Male, age 74, unknown 51.2
2482 Female, age 94, left hemisphere 50.2
Septal nuclei
nTPM: 54.6
1960 Male, age 74, unknown 59.9
2031 Female, age 72, unknown 57.0
2059 Female, age 85, both hemispheres 56.3
2009 Female, age 91, both hemispheres 53.5
2199 Male, age 80, right hemisphere 53.4
2629 Female, age 94, right hemisphere 51.6
2394 Male, age 61, left hemisphere 50.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 50.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.1
Samples: 246

Max nTPM: 88.1
Min nTPM: 17.4
Std nTPM: 12.4
Median nTPM: 43.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 88.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 86.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 83.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 81.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 80.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 77.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 77.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 76.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 70.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 68.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 67.0
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 50.8
Samples: 246

Max nTPM: 147.2
Min nTPM: 17.8
Std nTPM: 14.2
Median nTPM: 48.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 147.2
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 98.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 92.0
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 91.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 88.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 85.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 83.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 81.8
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 81.1
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 80.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 76.9
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 46.1
Samples: 205

Max nTPM: 119.0
Min nTPM: 18.5
Std nTPM: 13.4
Median nTPM: 43.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 119.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 105.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 92.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 79.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 78.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 76.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 73.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 72.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 70.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 70.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 69.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.0
FF:10164-103B2 76 years, female 28.0
Globus pallidus
Scaled Tags Per Million: 13.7
FF:10161-103A8 76 years, female 15.7
FF:10175-103C4 60 years, female 11.8
Nucleus accumbens
Scaled Tags Per Million: 28.7
FF:10037-101F1 23-56 years, mixed 28.7
Putamen
Scaled Tags Per Million: 32.4
FF:10176-103C5 60 years, female 32.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.8
Pig sample Sample description nTPM
Caudate
nTPM: 8.3
Samples: 4

Max nTPM: 9.6
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 9.2
Sample C Male 9.6
Sample D Male 8.3
Putamen
nTPM: 8.8
Samples: 4

Max nTPM: 11.3
Min nTPM: 6.7
Sample A Female 6.7
Sample B Female 7.0
Sample C Male 11.3
Sample D Male 10.3
Septum
nTPM: 8.5
Samples: 4

Max nTPM: 11.4
Min nTPM: 7.0
Sample A Female 7.0
Sample B Female 7.5
Sample C Male 11.4
Sample D Male 8.0
Ventral pallidum
nTPM: 8.5
Samples: 4

Max nTPM: 15.7
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 7.9
Sample C Male 15.7
Sample D Male 6.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 67.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 54.9
Samples: 4

Max nTPM: 63.9
Min nTPM: 49.9
Sample A Male 49.9
Sample B Male 52.6
Sample C Female 53.2
Sample D Female 63.9
Septum
nTPM: 65.8
Samples: 4

Max nTPM: 73.4
Min nTPM: 57.3
Sample A Male 62.7
Sample B Male 69.7
Sample C Female 73.4
Sample D Female 57.3
Ventral forebrain
nTPM: 67.8
Samples: 4

Max nTPM: 70.1
Min nTPM: 63.2
Sample A Male 69.2
Sample B Male 63.2
Sample C Female 70.1
Sample D Female 68.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.3
74357604 Antisense, RP_060119_03_A07, Mouse strain C57BL/6J (56 days, male) 7.7
293665 Antisense, RP_040604_02_H04, Mouse strain C57BL/6J (56 days, male) 4.8
Pallidum
Expression energy: 5.7
74357604 Antisense, RP_060119_03_A07, Mouse strain C57BL/6J (56 days, male) 6.2
293665 Antisense, RP_040604_02_H04, Mouse strain C57BL/6J (56 days, male) 5.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.