BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:32.6 nTPM
HPA:32.6 nTPM
GTEx:46.0 nTPM
FANTOM5:59.7 Scaled Tags Per Million
Pig:30.0 nTPM
Mouse:104.4 nTPM
Allen mouse:2.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA043867
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 32.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.7
2481 Female, age 94, left hemisphere 31.6
2846 Female, age 79, unknown 30.4
1854 Male, age 80, left hemisphere 30.0
2290 Female, age 72, unknown 30.0
1857 Female, age 85, left hemisphere 29.9
2288 Male, age 75, left hemisphere 29.5
1781 Male, age 74, unknown 29.2
2289 Male, age 61, right hemisphere 26.8
Claustrum
nTPM: 29.5
2198 Male, age 80, both hemispheres 31.2
2491 Male, age 75, both hemispheres 31.2
1956 Male, age 74, unknown 30.6
2568 Male, age 61, both hemispheres 29.9
2196 Female, age 79, unknown 29.7
2392 Female, age 94, both hemispheres 29.2
2284 Female, age 91, both hemispheres 29.0
2645 Female, age 72, unknown 27.9
2292 Female, age 85, both hemispheres 26.3
Globus pallidus, externus
nTPM: 31.6
2772 Female, age 79, unknown 35.7
1996 Male, age 80, right hemisphere 32.9
2395 Male, age 75, both hemispheres 32.7
2646 Male, age 61, right hemisphere 31.4
2567 Female, age 72, unknown 25.5
Globus pallidus, internus
nTPM: 32.6
2287 Male, age 75, right hemisphere 35.4
2778 Female, age 91, both hemispheres 34.8
2483 Female, age 94, right hemisphere 34.5
2111 Female, age 85, right hemisphere 32.5
1818 Male, age 74, unknown 30.8
2037 Male, age 80, right hemisphere 30.3
2566 Female, age 72, unknown 29.8
Nucleus accumbens
nTPM: 29.4
2286 Male, age 75, left hemisphere 31.4
1783 Male, age 74, unknown 31.1
1806 Female, age 85, left hemisphere 30.1
1856 Female, age 91, right hemisphere 30.1
2824 Male, age 61, right hemisphere 28.8
2391 Female, age 94, left hemisphere 28.3
2732 Male, age 80, right hemisphere 28.3
2698 Female, age 72, unknown 26.9
Nucleus basalis of Meynert
nTPM: 29.4
2569 Male, age 61, both hemispheres 31.5
2393 Male, age 80, right hemisphere 30.1
2484 Female, age 94, left hemisphere 28.8
2821 Male, age 75, both hemispheres 27.2
Nucleus of the diagonal band
nTPM: 29.2
2775 Male, age 80, right hemisphere 32.3
1812 Female, age 91, both hemispheres 32.0
2029 Male, age 61, right hemisphere 28.1
2195 Female, age 85, both hemispheres 27.7
1979 Male, age 74, unknown 26.0
Olfactory tubercle
nTPM: 29.2
1846 Male, age 80, right hemisphere 30.8
1998 Female, age 91, both hemispheres 30.0
2856 Male, age 75, right hemisphere 28.3
2487 Female, age 94, left hemisphere 27.6
Putamen
nTPM: 29.9
2466 Female, age 79, unknown 32.3
2482 Female, age 94, left hemisphere 31.5
1937 Female, age 91, right hemisphere 30.8
2647 Male, age 75, left hemisphere 30.4
1838 Male, age 80, right hemisphere 29.8
1829 Male, age 74, unknown 27.9
2489 Female, age 72, unknown 26.4
Septal nuclei
nTPM: 29.6
2031 Female, age 72, unknown 34.7
1960 Male, age 74, unknown 32.4
2394 Male, age 61, left hemisphere 29.1
2009 Female, age 91, both hemispheres 28.6
2059 Female, age 85, both hemispheres 28.2
2199 Male, age 80, right hemisphere 27.0
2629 Female, age 94, right hemisphere 26.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 46.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.8
Samples: 246

Max nTPM: 71.4
Min nTPM: 30.6
Std nTPM: 6.7
Median nTPM: 43.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 71.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 70.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 62.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 61.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 59.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 59.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 58.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 58.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 58.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 57.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 57.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.0
Samples: 246

Max nTPM: 75.9
Min nTPM: 23.4
Std nTPM: 6.9
Median nTPM: 44.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 75.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 68.7
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 63.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 62.6
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 62.1
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 57.4
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 56.5
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 56.5
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 55.9
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 55.8
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 55.3
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Brain - Putamen (basal ganglia)
Average nTPM: 46.0
Samples: 205

Max nTPM: 64.9
Min nTPM: 27.3
Std nTPM: 7.1
Median nTPM: 45.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 64.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 63.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 63.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 62.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 61.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 59.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 59.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 59.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 58.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 58.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 57.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 47.6
FF:10164-103B2 76 years, female 47.6
Globus pallidus
Scaled Tags Per Million: 59.7
FF:10175-103C4 60 years, female 67.8
FF:10161-103A8 76 years, female 51.6
Nucleus accumbens
Scaled Tags Per Million: 54.2
FF:10037-101F1 23-56 years, mixed 54.2
Putamen
Scaled Tags Per Million: 59.0
FF:10176-103C5 60 years, female 59.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 30.0
Pig sample Sample description nTPM
Caudate
nTPM: 25.5
Samples: 4

Max nTPM: 28.8
Min nTPM: 21.7
Sample A Female 23.6
Sample B Female 27.8
Sample C Male 28.8
Sample D Male 21.7
Putamen
nTPM: 29.8
Samples: 4

Max nTPM: 34.3
Min nTPM: 22.9
Sample A Female 32.6
Sample B Female 22.9
Sample C Male 34.3
Sample D Male 29.2
Septum
nTPM: 30.0
Samples: 4

Max nTPM: 38.4
Min nTPM: 24.7
Sample A Female 29.0
Sample B Female 24.7
Sample C Male 38.4
Sample D Male 27.8
Ventral pallidum
nTPM: 26.1
Samples: 4

Max nTPM: 33.6
Min nTPM: 21.6
Sample A Female 21.6
Sample B Female 26.3
Sample C Male 33.6
Sample D Male 23.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 104.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 88.8
Samples: 4

Max nTPM: 94.3
Min nTPM: 82.3
Sample A Male 88.5
Sample B Male 94.3
Sample C Female 82.3
Sample D Female 90.1
Septum
nTPM: 104.4
Samples: 4

Max nTPM: 111.7
Min nTPM: 96.3
Sample A Male 101.2
Sample B Male 108.3
Sample C Female 111.7
Sample D Female 96.3
Ventral forebrain
nTPM: 90.5
Samples: 4

Max nTPM: 99.2
Min nTPM: 83.7
Sample A Male 85.6
Sample B Male 93.4
Sample C Female 99.2
Sample D Female 83.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.0
68910969 Antisense, RP_050118_01_D06, Mouse strain C57BL/6J (56 days, male) 2.0
Pallidum
Expression energy: 1.9
68910969 Antisense, RP_050118_01_D06, Mouse strain C57BL/6J (56 days, male) 1.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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