MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:456.5 nTPM
HPA:456.5 nTPM
GTEx:421.3 nTPM
FANTOM5:721.3 Scaled Tags Per Million
Pig:504.5 nTPM
Mouse:433.3 nTPM
Allen mouse:16.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 456.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 436.1
2666 Male, age 74, left hemisphere 483.6
2411 Female, age 72, unknown 477.1
2586 Male, age 75, left hemisphere 477.0
2019 Male, age 18, unknown 440.5
1870 Female, age 42, unknown 433.5
1827 Male, age 72, unknown 426.0
1830 Male, age 51, unknown 421.1
1833 Male, age 53, unknown 417.5
2828 Female, age 72, unknown 414.1
2219 Male, age 76, both hemispheres 370.6
Dorsal raphe nucleus
nTPM: 417.3
2047 Male, age 72, unknown 450.0
1828 Male, age 53, unknown 435.6
2750 Male, age 76, both hemispheres 434.3
2298 Female, age 72, unknown 399.2
2016 Female, age 72, unknown 367.4
Inferior colliculus
nTPM: 383.2
1890 Male, age 53, unknown 402.6
1848 Female, age 42, unknown 391.0
2097 Female, age 72, unknown 373.3
2849 Male, age 72, unknown 365.9
Median raphe nucleus
nTPM: 452.9
2220 Male, age 76, midline 452.9
Pedunculopontine tegmental nucleus
nTPM: 405.0
2334 Male, age 80, both hemispheres 428.4
2338 Male, age 61, both hemispheres 394.1
1921 Female, age 85, both hemispheres 392.5
Periaquaductal grey, anterior
nTPM: 381.4
1947 Male, age 18, unknown 404.2
1795 Male, age 51, unknown 373.5
2502 Female, age 75, unknown 366.6
Periaquaductal grey, dorsal
nTPM: 357.8
1831 Male, age 72, unknown 372.0
2464 Female, age 72, unknown 360.8
2850 Male, age 76, both hemispheres 355.6
1840 Male, age 53, unknown 342.8
Periaquaductal grey, lateral
nTPM: 351.4
2272 Male, age 74, both hemispheres 367.6
2053 Male, age 18, unknown 360.1
2140 Male, age 76, both hemispheres 326.5
Pretectal area
nTPM: 397.2
2007 Male, age 72, unknown 451.9
1816 Male, age 51, unknown 443.4
1817 Female, age 42, unknown 432.5
1815 Male, age 53, unknown 420.9
1944 Female, age 72, unknown 418.4
2407 Male, age 75, both hemispheres 385.5
2667 Female, age 75, unknown 383.8
2825 Male, age 18, unknown 379.2
2224 Female, age 72, unknown 361.2
2316 Male, age 76, right hemisphere 346.7
2273 Male, age 74, both hemispheres 345.1
Red nucleus
nTPM: 452.6
1821 Female, age 72, unknown 515.2
2588 Male, age 74, left hemisphere 470.9
2503 Female, age 72, unknown 466.5
2584 Male, age 75, left hemisphere 461.0
1865 Male, age 51, unknown 457.5
1954 Female, age 42, unknown 452.9
1904 Male, age 53, unknown 450.5
2725 Female, age 75, unknown 441.9
2785 Male, age 18, unknown 439.1
2769 Male, age 72, unknown 435.6
2227 Male, age 72, unknown 430.8
2823 Male, age 76, right hemisphere 409.8
Substantia nigra
nTPM: 456.5
1916 Female, age 42, unknown 535.6
1941 Male, age 53, unknown 504.1
2583 Male, age 75, right hemisphere 496.1
1851 Male, age 51, unknown 477.6
1889 Female, age 72, unknown 453.9
2699 Male, age 18, unknown 440.5
2241 Male, age 72, unknown 437.3
2590 Female, age 75, unknown 416.8
2665 Male, age 74, both hemispheres 410.7
2409 Female, age 72, unknown 392.1
Superior colliculus
nTPM: 401.8
2668 Female, age 75, unknown 477.8
1913 Female, age 42, unknown 412.8
2587 Male, age 74, left hemisphere 412.0
1895 Male, age 76, right hemisphere 403.7
2261 Male, age 18, unknown 396.5
1839 Male, age 51, unknown 391.9
2087 Female, age 72, unknown 387.4
1796 Male, age 53, unknown 386.2
2664 Male, age 75, both hemispheres 377.1
1995 Male, age 72, unknown 372.9
Ventral tegmental area
nTPM: 433.9
2410 Female, age 72, unknown 488.2
2223 Female, age 72, unknown 471.1
1915 Female, age 42, unknown 442.5
2218 Male, age 76, both hemispheres 437.2
1942 Male, age 51, unknown 388.2
2021 Male, age 53, unknown 376.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 421.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 421.3
Samples: 139

Max nTPM: 1077.8
Min nTPM: 205.8
Std nTPM: 138.2
Median nTPM: 409.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1077.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 905.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 880.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 849.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 710.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 688.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 651.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 626.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 612.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 589.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 589.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 721.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 721.3
FF:10158-103A5 76 years, female 721.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 504.5
Pig sample Sample description nTPM
Midbrain
nTPM: 504.1
Samples: 4

Max nTPM: 576.6
Min nTPM: 408.8
Sample A Female 494.3
Sample B Female 408.8
Sample C Male 576.6
Sample D Male 536.5
Periaqueductal gray
nTPM: 344.3
Samples: 3

Max nTPM: 383.3
Min nTPM: 319.7
Sample B Female 329.8
Sample C Male 383.3
Sample D Male 319.7
Substantia nigra
nTPM: 431.9
Samples: 4

Max nTPM: 589.2
Min nTPM: 307.3
Sample A Female 589.2
Sample B Female 307.3
Sample C Male 499.1
Sample D Male 332.1
Superior colliculi
nTPM: 504.6
Samples: 4

Max nTPM: 671.1
Min nTPM: 276.3
Sample A Female 586.0
Sample B Female 276.3
Sample C Male 671.1
Sample D Male 484.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 433.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 433.3
Samples: 4

Max nTPM: 451.9
Min nTPM: 405.2
Sample A Male 405.2
Sample B Male 448.7
Sample C Female 451.9
Sample D Female 427.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.3
70805906 Antisense, RP_050725_02_E03, Mouse strain C57BL/6J (56 days, male) 17.2
68162204 Antisense, RP_041122_01_G02, Mouse strain C57BL/6J (56 days, male) 15.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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