We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RTN4
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • RTN4
BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:498.6 nTPM
HPA:498.6 nTPM
FANTOM5:545.7 Scaled Tags Per Million
Pig:476.9 nTPM
Allen mouse:14.3 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 498.6
Sample id Sample description nTPM
Area postrema
nTPM: 408.7
2799 Male, age 61, both hemispheres 467.1
2306 Male, age 80, both hemispheres 405.9
2054 Male, age 76, both hemispheres 353.3
Cuneate nuclei
nTPM: 438.2
2376 Male, age 61, both hemispheres 461.8
2131 Male, age 76, both hemispheres 433.4
2381 Male, age 80, both hemispheres 419.3
Dorsal medullary reticular nucleus
nTPM: 425.0
2040 Female, age 85, both hemispheres 502.4
2373 Male, age 61, both hemispheres 403.3
2088 Male, age 76, both hemispheres 369.4
Dorsal motor vagal complex
nTPM: 394.9
2000 Male, age 74, unknown 458.4
2133 Female, age 91, both hemispheres 450.9
2844 Male, age 55, unknown 414.8
2643 Male, age 74, both hemispheres 392.7
2813 Female, age 72, unknown 385.8
2797 Male, age 61, both hemispheres 365.0
2185 Male, age 76, both hemispheres 358.8
2807 Female, age 85, both hemispheres 332.6
Gigantocellular reticular nuclei, medullary
nTPM: 452.9
2314 Male, age 61, both hemispheres 493.2
2387 Female, age 91, both hemispheres 484.3
1876 Female, age 85, both hemispheres 452.1
2462 Male, age 74, both hemispheres 442.3
2310 Male, age 80, both hemispheres 441.3
2022 Male, age 76, right hemisphere 404.0
Gigantocellular reticular nuclei, pars
nTPM: 447.6
2168 Male, age 76, both hemispheres 511.5
2336 Male, age 61, both hemispheres 440.2
2084 Female, age 85, both hemispheres 438.5
2706 Male, age 80, both hemispheres 428.9
2330 Male, age 80, both hemispheres 418.7
Inferior olive
nTPM: 449.2
2563 Male, age 74, both hemispheres 487.8
2628 Female, age 91, both hemispheres 460.2
2178 Male, age 61, both hemispheres 451.4
2085 Female, age 85, both hemispheres 446.5
2379 Male, age 80, both hemispheres 400.3
Lateral medullary reticular nucleus
nTPM: 463.6
2305 Male, age 74, both hemispheres 523.4
2044 Male, age 76, both hemispheres 499.7
2852 Male, age 80, both hemispheres 455.7
2374 Male, age 61, both hemispheres 448.5
2804 Female, age 91, both hemispheres 432.2
2190 Female, age 85, both hemispheres 421.9
Medial vestibular nucleus
nTPM: 480.8
2624 Male, age 61, both hemispheres 518.6
2801 Male, age 74, both hemispheres 515.0
2803 Female, age 91, both hemispheres 493.3
2134 Male, age 76, both hemispheres 462.9
2093 Male, age 80, both hemispheres 455.2
2743 Female, age 85, both hemispheres 439.5
Motor hypoglossal nucleus
nTPM: 445.1
2125 Female, age 91, both hemispheres 512.8
2132 Female, age 85, both hemispheres 474.5
2182 Male, age 80, both hemispheres 466.4
2461 Male, age 61, both hemispheres 427.9
2277 Male, age 76, both hemispheres 344.0
Nucleus ambiguus
nTPM: 433.5
2096 Female, age 85, both hemispheres 469.5
2071 Male, age 76, both hemispheres 397.4
Nucleus cuneatus
nTPM: 415.0
2564 Male, age 74, both hemispheres 472.2
2380 Male, age 80, both hemispheres 435.5
2100 Male, age 76, both hemispheres 399.1
2562 Male, age 61, both hemispheres 396.7
2808 Female, age 85, both hemispheres 394.4
2805 Female, age 91, both hemispheres 391.8
Nucleus gracilis
nTPM: 428.7
2627 Male, age 74, both hemispheres 467.3
2382 Male, age 80, both hemispheres 446.4
2299 Female, age 85, both hemispheres 372.5
Nucleus raphe magnus
nTPM: 498.6
2160 Male, age 61, both hemispheres 579.7
2172 Female, age 85, both hemispheres 507.4
2455 Male, age 74, both hemispheres 485.0
2328 Male, age 80, both hemispheres 481.1
2051 Male, age 76, both hemispheres 475.7
2459 Female, age 91, both hemispheres 462.9
Nucleus raphe obscurus
nTPM: 454.9
2845 Female, age 85, midline 502.0
2800 Male, age 61, midline 475.1
2142 Male, age 76, midline 387.5
Nucleus raphe pallidus
nTPM: 461.0
1924 Male, age 61, midline 513.3
2183 Male, age 80, midline 479.8
2145 Male, age 76, midline 389.8
Nucleus tractus solitarii
nTPM: 374.6
2144 Female, age 91, right hemisphere 442.2
2656 Male, age 76, both hemispheres 363.6
2307 Male, age 80, both hemispheres 349.7
2191 Female, age 85, both hemispheres 342.9
Parvicellular reticular nuclei
nTPM: 472.1
2558 Male, age 74, both hemispheres 501.0
2119 Male, age 80, both hemispheres 459.1
2095 Male, age 76, both hemispheres 456.1
Parvicellular reticular nuclei, medullary
nTPM: 436.0
2189 Female, age 91, both hemispheres 470.1
2091 Female, age 85, both hemispheres 439.3
2181 Male, age 80, left hemisphere 398.5
Peritrigeminal nucleus
nTPM: 462.5
2179 Male, age 61, both hemispheres 483.1
2136 Male, age 76, both hemispheres 459.6
2067 Female, age 85, both hemispheres 445.0
Prepositus hypoglossal nucleus
nTPM: 446.2
2855 Female, age 85, right hemisphere 503.3
2086 Male, age 80, both hemispheres 389.1
Spinal trigeminal nucleus, caudal
nTPM: 453.9
2390 Female, age 91, both hemispheres 537.4
2447 Male, age 76, both hemispheres 444.1
2312 Male, age 61, both hemispheres 436.2
2642 Male, age 74, both hemispheres 430.6
2308 Male, age 80, both hemispheres 421.1
Spinal trigeminal nucleus, interpolar
nTPM: 490.6
2625 Male, age 61, both hemispheres 579.4
2066 Male, age 76, right hemisphere 525.1
2389 Female, age 91, both hemispheres 471.7
2033 Male, age 80, both hemispheres 451.4
2386 Female, age 85, both hemispheres 425.3
Spinal vestibular nucleus
nTPM: 449.9
2384 Male, age 74, both hemispheres 469.7
2186 Female, age 91, both hemispheres 465.2
2806 Female, age 85, both hemispheres 463.1
2780 Male, age 80, both hemispheres 441.3
2748 Male, age 76, both hemispheres 438.3
2796 Male, age 61, both hemispheres 422.0
Ventral medullary reticular nucleus
nTPM: 425.4
2372 Male, age 61, both hemispheres 445.8
2060 Male, age 76, both hemispheres 405.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 449.4
2180 Male, age 61, both hemispheres 463.9
2741 Female, age 85, both hemispheres 462.3
1986 Male, age 76, both hemispheres 458.9
2302 Female, age 91, both hemispheres 437.7
2118 Male, age 80, both hemispheres 424.3

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 545.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 545.7
FF:10155-103A2 76 years, female 598.9
FF:10038-101F2 18-64 years, mixed 552.1
FF:10174-103C3 60 years, female 486.1

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 476.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 476.9
Samples: 4

Max nTPM: 612.0
Min nTPM: 409.7
Sample A Female 612.0
Sample B Female 441.4
Sample C Male 444.4
Sample D Male 409.7

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 14.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 14.3
70805906 Antisense, RP_050725_02_E03, Mouse strain C57BL/6J (56 days, male) 15.7
68162204 Antisense, RP_041122_01_G02, Mouse strain C57BL/6J (56 days, male) 12.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.