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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:453.2 nTPM
HPA:453.2 nTPM
FANTOM5:708.4 Scaled Tags Per Million
Pig:545.4 nTPM
Mouse:477.3 nTPM
Allen mouse:20.1 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 453.2
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 420.6
2396 Male, age 61, right hemisphere 444.3
2032 Female, age 42, unknown 429.5
2497 Male, age 66, unknown 387.9
Centromedial thalamic nucleus
nTPM: 410.8
2401 Male, age 76, right hemisphere 453.5
2279 Female, age 85, left hemisphere 368.1
Habenula
nTPM: 373.4
1957 Male, age 80, both hemispheres 415.1
2203 Male, age 61, left hemisphere 388.2
2252 Male, age 62, unknown 345.6
2276 Male, age 66, unknown 344.9
Lateral geniculate body
nTPM: 446.7
2575 Female, age 94, right hemisphere 533.8
1953 Male, age 62, unknown 467.7
2035 Female, age 72, unknown 465.9
2106 Female, age 67, right hemisphere 447.6
2841 Male, age 80, both hemispheres 447.6
2659 Male, age 66, unknown 427.7
2399 Male, age 61, left hemisphere 413.0
2857 Male, age 74, right hemisphere 370.6
Lateral thalamic nuclei
nTPM: 442.9
2765 Female, age 67, both hemispheres 490.4
2577 Male, age 74, both hemispheres 487.7
2573 Female, age 94, left hemisphere 469.0
2661 Female, age 72, unknown 385.0
1903 Male, age 76, left hemisphere 382.5
Medial dorsal thalamic nucleus
nTPM: 404.7
2572 Female, age 94, right hemisphere 470.9
2576 Male, age 74, both hemispheres 448.0
1859 Male, age 76, both hemispheres 420.4
1971 Male, age 61, right hemisphere 420.0
2660 Female, age 72, unknown 415.9
2492 Male, age 75, right hemisphere 404.0
1810 Male, age 48, unknown 402.7
2498 Male, age 66, unknown 395.8
1930 Female, age 42, unknown 394.0
2026 Male, age 62, unknown 391.3
2283 Male, age 80, right hemisphere 369.5
2402 Female, age 67, both hemispheres 369.2
2039 Female, age 72, unknown 358.8
Medial geniculate body
nTPM: 398.0
2571 Male, age 75, right hemisphere 489.9
2650 Female, age 94, left hemisphere 414.4
1811 Female, age 42, unknown 393.3
2217 Female, age 72, unknown 384.0
2657 Male, age 74, right hemisphere 380.8
2207 Male, age 80, right hemisphere 371.8
2049 Male, age 76, both hemispheres 351.8
Nucleus reuniens
nTPM: 403.2
2210 Female, age 85, left hemisphere 424.4
2205 Male, age 80, left hemisphere 398.9
2212 Female, age 67, left hemisphere 386.2
Nucleus rhomboideus
nTPM: 398.1
2280 Female, age 85, left hemisphere 444.0
2206 Male, age 80, both hemispheres 382.7
2213 Female, age 67, left hemisphere 367.6
Posterior thalamic nucleus
nTPM: 401.2
2649 Female, age 94, both hemispheres 486.9
2266 Male, age 76, right hemisphere 407.9
2655 Male, age 74, right hemisphere 370.3
2495 Female, age 67, right hemisphere 339.8
Pulvinar
nTPM: 411.4
1972 Male, age 62, unknown 465.8
2398 Male, age 61, left hemisphere 456.8
1899 Female, age 42, unknown 421.7
1929 Male, age 48, unknown 421.1
1932 Male, age 80, right hemisphere 418.3
2499 Male, age 66, unknown 395.2
2214 Male, age 76, right hemisphere 394.1
2724 Male, age 74, right hemisphere 389.2
2582 Female, age 72, unknown 385.3
2496 Female, age 67, right hemisphere 366.6
Subthalamic nucleus
nTPM: 453.2
2124 Male, age 62, unknown 502.9
2658 Male, age 74, both hemispheres 492.8
2282 Male, age 61, both hemispheres 492.4
2275 Male, age 66, unknown 477.4
2056 Female, age 72, unknown 452.2
2779 Female, age 42, unknown 419.0
2216 Male, age 48, unknown 394.9
2406 Female, age 72, unknown 393.5
Ventral posterolateral thalamic nucleus
nTPM: 432.4
2578 Male, age 74, both hemispheres 489.3
2740 Male, age 76, right hemisphere 458.7
2570 Male, age 75, right hemisphere 450.9
2397 Male, age 61, right hemisphere 429.9
2581 Female, age 72, unknown 402.5
2197 Male, age 80, both hemispheres 363.3
Ventral posteromedial thalamic nucleus
nTPM: 420.3
2653 Male, age 74, both hemispheres 493.7
2281 Male, age 75, right hemisphere 459.6
2202 Male, age 61, left hemisphere 425.1
2127 Male, age 76, right hemisphere 370.9
2758 Male, age 80, both hemispheres 352.4
Ventral thalamic nuclei
nTPM: 430.8
2652 Male, age 74, left hemisphere 515.7
1845 Male, age 48, unknown 475.3
2580 Male, age 66, unknown 459.3
2858 Female, age 72, unknown 446.1
1860 Male, age 76, both hemispheres 436.3
2291 Female, age 72, unknown 410.5
1912 Female, age 42, unknown 391.8
2285 Male, age 62, unknown 373.9
2204 Male, age 80, both hemispheres 368.3
Ventromedial nucleus
nTPM: 329.4
1982 Female, age 72, unknown 341.6
1822 Female, age 42, unknown 317.3
Zona incerta
nTPM: 420.7
2215 Male, age 66, unknown 482.8
2822 Male, age 74, right hemisphere 481.2
2403 Male, age 62, unknown 410.3
2663 Female, age 72, unknown 378.7
2208 Male, age 80, right hemisphere 350.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 708.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 708.4
FF:10154-103A1 76 years, female 708.4

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 545.4
Pig sample Sample description nTPM
Thalamus
nTPM: 545.4
Samples: 4

Max nTPM: 661.6
Min nTPM: 415.7
Sample A Female 661.6
Sample B Female 415.7
Sample C Male 648.0
Sample D Male 456.3

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 477.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 477.3
Samples: 4

Max nTPM: 494.1
Min nTPM: 471.1
Sample A Male 471.3
Sample B Male 494.1
Sample C Female 471.1
Sample D Female 472.5

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 20.1
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 20.1
68162204 Antisense, RP_041122_01_G02, Mouse strain C57BL/6J (56 days, male) 21.0
70805906 Antisense, RP_050725_02_E03, Mouse strain C57BL/6J (56 days, male) 19.1

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