We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RTN4
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • RTN4
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:440.8 nTPM
HPA:440.8 nTPM
GTEx:521.1 nTPM
FANTOM5:634.9 Scaled Tags Per Million
Pig:454.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 440.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 423.3
1981 Female, age 72, midline 444.9
2565 Male, age 75, midline 433.5
2194 Female, age 79, both hemispheres 424.8
2816 Male, age 47, midline 408.9
2048 Male, age 55, midline 404.2
Cervical spinal cord, dorsal horn
nTPM: 432.7
2296 Male, age 66, both hemispheres 560.8
2173 Female, age 72, unknown 524.1
2069 Male, age 47, both hemispheres 416.5
1877 Male, age 55, unknown 395.7
2297 Male, age 75, both hemispheres 365.4
2721 Male, age 90, both hemispheres 333.9
Cervical spinal cord, ventral horn
nTPM: 440.8
2480 Male, age 75, both hemispheres 471.6
2068 Male, age 55, unknown 463.2
2809 Male, age 90, both hemispheres 448.2
2820 Female, age 79, both hemispheres 437.1
2098 Female, age 72, unknown 423.5
2295 Male, age 66, both hemispheres 401.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 521.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 521.1
Samples: 159

Max nTPM: 969.4
Min nTPM: 263.6
Std nTPM: 131.5
Median nTPM: 511.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 969.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 877.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 843.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 829.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 792.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 781.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 773.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 767.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 748.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 735.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 716.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 706.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 702.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 701.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 692.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 691.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 688.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 684.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 678.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 676.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 676.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 670.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 661.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 658.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 657.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 655.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 654.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 652.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 650.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 648.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 647.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 642.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 640.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 639.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 626.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 626.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 617.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 617.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 613.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 608.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 605.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 605.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 604.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 604.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 603.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 599.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 589.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 583.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 582.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 580.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 577.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 577.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 577.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 576.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 575.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 574.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 570.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 570.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 570.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 566.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 566.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 557.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 554.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 551.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 545.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 541.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 538.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 538.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 534.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 529.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 525.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 525.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 522.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 522.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 520.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 520.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 520.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 518.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 514.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 511.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 511.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 505.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 500.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 489.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 483.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 483.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 482.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 481.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 474.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 470.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 468.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 465.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 464.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 460.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 458.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 457.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 451.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 449.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 447.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 447.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 446.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 445.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 444.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 443.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 442.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 442.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 441.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 440.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 436.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 435.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 432.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 430.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 430.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 430.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 428.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 428.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 427.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 424.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 421.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 420.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 418.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 417.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 417.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 417.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 408.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 407.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 406.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 405.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 404.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 401.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 401.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 400.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 400.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 397.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 395.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 395.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 394.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 394.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 389.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 388.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 380.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 375.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 375.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 373.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 371.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 368.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 363.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 358.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 334.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 332.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 321.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 321.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 318.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 316.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 311.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 311.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 295.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 275.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 263.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 634.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 634.9
FF:10181-103D1 60 years, female 798.1
FF:10159-103A6 76 years, female 471.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 454.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 363.5
Samples: 4

Max nTPM: 443.6
Min nTPM: 249.7
Sample A Female 443.6
Sample B Female 355.1
Sample C Male 249.7
Sample D Male 405.7
Ventral spinal cord
nTPM: 454.7
Samples: 4

Max nTPM: 525.9
Min nTPM: 416.2
Sample A Female 525.9
Sample B Female 442.9
Sample C Male 433.6
Sample D Male 416.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.