BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:16.1 nTPM
HPA:16.1 nTPM
GTEx:20.2 nTPM
FANTOM5:43.8 Scaled Tags Per Million
Pig:18.1 nTPM
Mouse:27.9 nTPM
Allen mouse:0.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA071815
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.7
1857 Female, age 85, left hemisphere 17.5
2290 Female, age 72, unknown 17.1
2846 Female, age 79, unknown 16.2
1854 Male, age 80, left hemisphere 15.7
2288 Male, age 75, left hemisphere 15.2
1781 Male, age 74, unknown 15.1
2289 Male, age 61, right hemisphere 14.9
2481 Female, age 94, left hemisphere 14.3
Claustrum
nTPM: 15.2
2196 Female, age 79, unknown 15.7
1956 Male, age 74, unknown 15.4
2491 Male, age 75, both hemispheres 15.4
2198 Male, age 80, both hemispheres 15.3
2645 Female, age 72, unknown 15.3
2292 Female, age 85, both hemispheres 15.2
2392 Female, age 94, both hemispheres 15.0
2568 Male, age 61, both hemispheres 15.0
2284 Female, age 91, both hemispheres 14.8
Globus pallidus, externus
nTPM: 15.3
1996 Male, age 80, right hemisphere 15.8
2567 Female, age 72, unknown 15.3
2395 Male, age 75, both hemispheres 15.2
2646 Male, age 61, right hemisphere 15.1
2772 Female, age 79, unknown 15.1
Globus pallidus, internus
nTPM: 15.2
2287 Male, age 75, right hemisphere 16.0
2778 Female, age 91, both hemispheres 15.6
2111 Female, age 85, right hemisphere 15.4
1818 Male, age 74, unknown 15.3
2037 Male, age 80, right hemisphere 14.9
2483 Female, age 94, right hemisphere 14.9
2566 Female, age 72, unknown 14.4
Nucleus accumbens
nTPM: 15.7
2698 Female, age 72, unknown 17.2
1806 Female, age 85, left hemisphere 16.2
1783 Male, age 74, unknown 16.1
2824 Male, age 61, right hemisphere 16.0
1856 Female, age 91, right hemisphere 15.7
2732 Male, age 80, right hemisphere 15.6
2286 Male, age 75, left hemisphere 15.0
2391 Female, age 94, left hemisphere 14.2
Nucleus basalis of Meynert
nTPM: 14.9
2393 Male, age 80, right hemisphere 15.8
2484 Female, age 94, left hemisphere 14.9
2821 Male, age 75, both hemispheres 14.6
2569 Male, age 61, both hemispheres 14.2
Nucleus of the diagonal band
nTPM: 16.1
2775 Male, age 80, right hemisphere 16.9
2195 Female, age 85, both hemispheres 16.6
2029 Male, age 61, right hemisphere 16.3
1812 Female, age 91, both hemispheres 15.9
1979 Male, age 74, unknown 14.7
Olfactory tubercle
nTPM: 15.8
2487 Female, age 94, left hemisphere 16.7
1998 Female, age 91, both hemispheres 16.1
1846 Male, age 80, right hemisphere 15.5
2856 Male, age 75, right hemisphere 14.8
Putamen
nTPM: 15.3
1838 Male, age 80, right hemisphere 16.3
1829 Male, age 74, unknown 15.9
2466 Female, age 79, unknown 15.8
2482 Female, age 94, left hemisphere 15.2
2489 Female, age 72, unknown 14.8
1937 Female, age 91, right hemisphere 14.6
2647 Male, age 75, left hemisphere 14.2
Septal nuclei
nTPM: 15.6
1960 Male, age 74, unknown 16.8
2059 Female, age 85, both hemispheres 16.0
2009 Female, age 91, both hemispheres 15.9
2629 Female, age 94, right hemisphere 15.7
2031 Female, age 72, unknown 15.5
2199 Male, age 80, right hemisphere 14.6
2394 Male, age 61, left hemisphere 14.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.7
Samples: 246

Max nTPM: 62.0
Min nTPM: 5.7
Std nTPM: 7.0
Median nTPM: 16.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 62.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 49.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 47.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 39.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 38.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 38.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 34.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 33.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 33.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 30.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 30.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.2
Samples: 246

Max nTPM: 76.0
Min nTPM: 2.9
Std nTPM: 7.5
Median nTPM: 18.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 76.0
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 58.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 43.5
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 39.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 36.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 36.6
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 36.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 35.5
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 34.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 33.1
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 33.0
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Brain - Putamen (basal ganglia)
Average nTPM: 18.1
Samples: 205

Max nTPM: 50.7
Min nTPM: 8.3
Std nTPM: 6.1
Median nTPM: 16.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 50.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 38.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 34.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 33.3
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 33.1
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 32.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 32.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 32.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 32.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 31.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 29.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 43.8
FF:10164-103B2 76 years, female 43.8
Globus pallidus
Scaled Tags Per Million: 31.7
FF:10175-103C4 60 years, female 37.1
FF:10161-103A8 76 years, female 26.3
Nucleus accumbens
Scaled Tags Per Million: 26.9
FF:10037-101F1 23-56 years, mixed 26.9
Putamen
Scaled Tags Per Million: 35.0
FF:10176-103C5 60 years, female 35.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.1
Pig sample Sample description nTPM
Caudate
nTPM: 14.1
Samples: 4

Max nTPM: 15.2
Min nTPM: 11.7
Sample A Female 11.7
Sample B Female 14.8
Sample C Male 15.2
Sample D Male 14.8
Putamen
nTPM: 18.1
Samples: 4

Max nTPM: 24.2
Min nTPM: 14.3
Sample A Female 14.3
Sample B Female 15.3
Sample C Male 24.2
Sample D Male 18.6
Septum
nTPM: 11.7
Samples: 4

Max nTPM: 15.0
Min nTPM: 7.4
Sample A Female 15.0
Sample B Female 14.4
Sample C Male 9.8
Sample D Male 7.4
Ventral pallidum
nTPM: 12.6
Samples: 4

Max nTPM: 14.6
Min nTPM: 11.4
Sample A Female 12.7
Sample B Female 14.6
Sample C Male 11.4
Sample D Male 11.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 27.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 27.9
Samples: 4

Max nTPM: 28.9
Min nTPM: 27.5
Sample A Male 27.5
Sample B Male 27.7
Sample C Female 27.6
Sample D Female 28.9
Septum
nTPM: 24.0
Samples: 4

Max nTPM: 26.7
Min nTPM: 21.1
Sample A Male 21.9
Sample B Male 26.3
Sample C Female 26.7
Sample D Female 21.1
Ventral forebrain
nTPM: 27.4
Samples: 4

Max nTPM: 33.5
Min nTPM: 24.4
Sample A Male 26.9
Sample B Male 24.4
Sample C Female 33.5
Sample D Female 24.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
75651230 Antisense, RP_060518_01_D08, Mouse strain C57BL/6J (56 days, male) 0.6
71664132 Antisense, RP_050927_04_G03, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.4
75651230 Antisense, RP_060518_01_D08, Mouse strain C57BL/6J (56 days, male) 0.6
71664132 Antisense, RP_050927_04_G03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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