MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:79.4 nTPM
HPA:79.4 nTPM
GTEx:78.2 nTPM
FANTOM5:197.4 Scaled Tags Per Million
Pig:64.5 nTPM
Mouse:113.0 nTPM
Allen mouse:10.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.8
2411 Female, age 72, unknown 101.4
1870 Female, age 42, unknown 83.5
2019 Male, age 18, unknown 83.1
1830 Male, age 51, unknown 73.5
1833 Male, age 53, unknown 73.0
2828 Female, age 72, unknown 59.4
1827 Male, age 72, unknown 57.5
2666 Male, age 74, left hemisphere 53.5
2219 Male, age 76, both hemispheres 53.3
2586 Male, age 75, left hemisphere 49.8
Dorsal raphe nucleus
nTPM: 54.9
2750 Male, age 76, both hemispheres 78.3
1828 Male, age 53, unknown 52.8
2016 Female, age 72, unknown 50.6
2047 Male, age 72, unknown 47.3
2298 Female, age 72, unknown 45.3
Inferior colliculus
nTPM: 56.1
2097 Female, age 72, unknown 65.0
1890 Male, age 53, unknown 60.8
1848 Female, age 42, unknown 55.7
2849 Male, age 72, unknown 42.9
Median raphe nucleus
nTPM: 48.5
2220 Male, age 76, midline 48.5
Pedunculopontine tegmental nucleus
nTPM: 58.9
2334 Male, age 80, both hemispheres 64.1
1921 Female, age 85, both hemispheres 60.2
2338 Male, age 61, both hemispheres 52.5
Periaquaductal grey, anterior
nTPM: 49.0
2502 Female, age 75, unknown 53.4
1947 Male, age 18, unknown 53.2
1795 Male, age 51, unknown 40.5
Periaquaductal grey, dorsal
nTPM: 41.0
2464 Female, age 72, unknown 57.2
1831 Male, age 72, unknown 43.5
1840 Male, age 53, unknown 33.6
2850 Male, age 76, both hemispheres 29.7
Periaquaductal grey, lateral
nTPM: 43.8
2272 Male, age 74, both hemispheres 54.6
2053 Male, age 18, unknown 48.1
2140 Male, age 76, both hemispheres 28.8
Pretectal area
nTPM: 55.9
1815 Male, age 53, unknown 70.3
2007 Male, age 72, unknown 69.8
1817 Female, age 42, unknown 63.4
2273 Male, age 74, both hemispheres 58.4
2407 Male, age 75, both hemispheres 57.1
1944 Female, age 72, unknown 54.4
1816 Male, age 51, unknown 53.4
2667 Female, age 75, unknown 53.2
2316 Male, age 76, right hemisphere 48.6
2825 Male, age 18, unknown 45.2
2224 Female, age 72, unknown 41.5
Red nucleus
nTPM: 79.4
1821 Female, age 72, unknown 101.0
1865 Male, age 51, unknown 96.7
1904 Male, age 53, unknown 87.7
2785 Male, age 18, unknown 86.0
2769 Male, age 72, unknown 80.3
1954 Female, age 42, unknown 79.1
2503 Female, age 72, unknown 78.5
2227 Male, age 72, unknown 76.7
2588 Male, age 74, left hemisphere 75.1
2823 Male, age 76, right hemisphere 67.4
2584 Male, age 75, left hemisphere 62.7
2725 Female, age 75, unknown 61.0
Substantia nigra
nTPM: 57.3
2409 Female, age 72, unknown 70.6
1851 Male, age 51, unknown 66.6
1889 Female, age 72, unknown 65.3
2583 Male, age 75, right hemisphere 63.5
2590 Female, age 75, unknown 57.4
2241 Male, age 72, unknown 57.2
1941 Male, age 53, unknown 54.1
1916 Female, age 42, unknown 53.7
2699 Male, age 18, unknown 49.5
2665 Male, age 74, both hemispheres 35.2
Superior colliculus
nTPM: 61.5
1913 Female, age 42, unknown 81.2
2587 Male, age 74, left hemisphere 75.4
1995 Male, age 72, unknown 72.9
2668 Female, age 75, unknown 71.5
1895 Male, age 76, right hemisphere 65.5
1839 Male, age 51, unknown 55.7
1796 Male, age 53, unknown 54.2
2087 Female, age 72, unknown 52.2
2261 Male, age 18, unknown 49.2
2664 Male, age 75, both hemispheres 37.3
Ventral tegmental area
nTPM: 64.1
2410 Female, age 72, unknown 97.6
2223 Female, age 72, unknown 75.4
1915 Female, age 42, unknown 55.1
2218 Male, age 76, both hemispheres 53.6
1942 Male, age 51, unknown 52.2
2021 Male, age 53, unknown 50.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 78.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.2
Samples: 139

Max nTPM: 176.7
Min nTPM: 22.5
Std nTPM: 31.4
Median nTPM: 71.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 176.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 175.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 170.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 162.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 153.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 146.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 143.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 135.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 133.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 128.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 126.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 197.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 197.4
FF:10158-103A5 76 years, female 197.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 64.5
Pig sample Sample description nTPM
Midbrain
nTPM: 64.5
Samples: 4

Max nTPM: 90.8
Min nTPM: 49.3
Sample A Female 67.3
Sample B Female 50.5
Sample C Male 90.8
Sample D Male 49.3
Periaqueductal gray
nTPM: 36.2
Samples: 3

Max nTPM: 38.5
Min nTPM: 34.1
Sample B Female 36.0
Sample C Male 38.5
Sample D Male 34.1
Substantia nigra
nTPM: 54.4
Samples: 4

Max nTPM: 66.6
Min nTPM: 42.0
Sample A Female 66.6
Sample B Female 42.0
Sample C Male 63.6
Sample D Male 45.4
Superior colliculi
nTPM: 56.5
Samples: 4

Max nTPM: 78.7
Min nTPM: 38.5
Sample A Female 55.3
Sample B Female 38.5
Sample C Male 78.7
Sample D Male 53.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 113.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.0
Samples: 4

Max nTPM: 115.4
Min nTPM: 111.9
Sample A Male 115.4
Sample B Male 112.6
Sample C Female 111.9
Sample D Female 112.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.6
2366 Antisense, RP_Baylor_102826, Mouse strain C57BL/6J (56 days, male) 13.6
74881159 Antisense, RP_060220_01_A08, Mouse strain C57BL/6J (56 days, male) 7.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.