MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.6 nTPM
HPA:46.6 nTPM
GTEx:34.5 nTPM
FANTOM5:45.3 Scaled Tags Per Million
Pig:22.7 nTPM
Mouse:59.6 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.6
2411 Female, age 72, unknown 48.4
1870 Female, age 42, unknown 48.1
1833 Male, age 53, unknown 46.8
1827 Male, age 72, unknown 46.1
1830 Male, age 51, unknown 46.0
2828 Female, age 72, unknown 45.6
2019 Male, age 18, unknown 45.3
2219 Male, age 76, both hemispheres 43.9
2666 Male, age 74, left hemisphere 42.9
2586 Male, age 75, left hemisphere 42.6
Dorsal raphe nucleus
nTPM: 46.2
2750 Male, age 76, both hemispheres 47.4
2298 Female, age 72, unknown 46.9
2016 Female, age 72, unknown 46.1
1828 Male, age 53, unknown 46.0
2047 Male, age 72, unknown 44.3
Inferior colliculus
nTPM: 46.6
2097 Female, age 72, unknown 48.7
1890 Male, age 53, unknown 46.5
1848 Female, age 42, unknown 45.8
2849 Male, age 72, unknown 45.4
Median raphe nucleus
nTPM: 45.5
2220 Male, age 76, midline 45.5
Pedunculopontine tegmental nucleus
nTPM: 45.4
1921 Female, age 85, both hemispheres 46.5
2334 Male, age 80, both hemispheres 46.0
2338 Male, age 61, both hemispheres 43.7
Periaquaductal grey, anterior
nTPM: 46.0
1947 Male, age 18, unknown 47.9
2502 Female, age 75, unknown 45.2
1795 Male, age 51, unknown 44.8
Periaquaductal grey, dorsal
nTPM: 46.2
2850 Male, age 76, both hemispheres 47.8
2464 Female, age 72, unknown 46.2
1831 Male, age 72, unknown 45.5
1840 Male, age 53, unknown 45.4
Periaquaductal grey, lateral
nTPM: 46.5
2272 Male, age 74, both hemispheres 47.0
2140 Male, age 76, both hemispheres 46.9
2053 Male, age 18, unknown 45.7
Pretectal area
nTPM: 46.3
2316 Male, age 76, right hemisphere 48.6
2273 Male, age 74, both hemispheres 48.4
2667 Female, age 75, unknown 48.2
1817 Female, age 42, unknown 46.6
2224 Female, age 72, unknown 46.5
1816 Male, age 51, unknown 46.0
2825 Male, age 18, unknown 45.9
1815 Male, age 53, unknown 45.7
2007 Male, age 72, unknown 45.2
1944 Female, age 72, unknown 44.9
2407 Male, age 75, both hemispheres 43.5
Red nucleus
nTPM: 46.5
1821 Female, age 72, unknown 50.7
2823 Male, age 76, right hemisphere 48.5
1954 Female, age 42, unknown 47.9
1904 Male, age 53, unknown 47.5
1865 Male, age 51, unknown 46.7
2769 Male, age 72, unknown 46.5
2503 Female, age 72, unknown 46.4
2725 Female, age 75, unknown 46.2
2227 Male, age 72, unknown 45.9
2785 Male, age 18, unknown 45.3
2588 Male, age 74, left hemisphere 43.7
2584 Male, age 75, left hemisphere 42.8
Substantia nigra
nTPM: 45.3
2241 Male, age 72, unknown 48.4
1916 Female, age 42, unknown 46.8
1889 Female, age 72, unknown 46.2
2699 Male, age 18, unknown 46.0
1851 Male, age 51, unknown 45.4
1941 Male, age 53, unknown 45.2
2590 Female, age 75, unknown 44.5
2665 Male, age 74, both hemispheres 44.1
2583 Male, age 75, right hemisphere 43.3
2409 Female, age 72, unknown 43.1
Superior colliculus
nTPM: 46.1
1895 Male, age 76, right hemisphere 48.5
1995 Male, age 72, unknown 47.4
2587 Male, age 74, left hemisphere 47.3
1913 Female, age 42, unknown 46.9
1839 Male, age 51, unknown 46.5
1796 Male, age 53, unknown 45.8
2668 Female, age 75, unknown 45.8
2261 Male, age 18, unknown 45.7
2087 Female, age 72, unknown 45.5
2664 Male, age 75, both hemispheres 41.3
Ventral tegmental area
nTPM: 46.4
2410 Female, age 72, unknown 48.0
1915 Female, age 42, unknown 46.6
2218 Male, age 76, both hemispheres 46.4
1942 Male, age 51, unknown 46.1
2021 Male, age 53, unknown 45.6
2223 Female, age 72, unknown 45.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.5
Samples: 139

Max nTPM: 55.0
Min nTPM: 18.4
Std nTPM: 6.4
Median nTPM: 33.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 55.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 50.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 50.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 50.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 49.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 49.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 48.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 47.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 46.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 46.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 45.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.3
FF:10158-103A5 76 years, female 45.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.7
Pig sample Sample description nTPM
Midbrain
nTPM: 21.1
Samples: 4

Max nTPM: 23.9
Min nTPM: 19.4
Sample A Female 23.9
Sample B Female 20.0
Sample C Male 21.1
Sample D Male 19.4
Periaqueductal gray
nTPM: 20.5
Samples: 3

Max nTPM: 22.7
Min nTPM: 18.2
Sample B Female 20.5
Sample C Male 22.7
Sample D Male 18.2
Substantia nigra
nTPM: 20.7
Samples: 4

Max nTPM: 24.7
Min nTPM: 17.8
Sample A Female 24.7
Sample B Female 19.6
Sample C Male 20.5
Sample D Male 17.8
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 24.1
Min nTPM: 21.2
Sample A Female 24.1
Sample B Female 23.8
Sample C Male 21.6
Sample D Male 21.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.6
Samples: 4

Max nTPM: 62.7
Min nTPM: 56.0
Sample A Male 56.0
Sample B Male 58.1
Sample C Female 61.6
Sample D Female 62.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
587429 Antisense, RP_040831_01_G03, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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