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  • EFHD1
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:237.8 nTPM
HPA:237.8 nTPM
FANTOM5:782.5 Scaled Tags Per Million
Pig:52.0 nTPM
Mouse:55.5 nTPM
Allen mouse:0.0 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 237.8
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 206.3
2032 Female, age 42, unknown 213.8
2497 Male, age 66, unknown 202.7
2396 Male, age 61, right hemisphere 202.4
Centromedial thalamic nucleus
nTPM: 200.1
2401 Male, age 76, right hemisphere 203.7
2279 Female, age 85, left hemisphere 196.5
Habenula
nTPM: 182.6
2203 Male, age 61, left hemisphere 192.7
2252 Male, age 62, unknown 187.2
2276 Male, age 66, unknown 179.4
1957 Male, age 80, both hemispheres 170.9
Lateral geniculate body
nTPM: 231.4
2841 Male, age 80, both hemispheres 287.4
2575 Female, age 94, right hemisphere 280.4
2659 Male, age 66, unknown 240.4
2857 Male, age 74, right hemisphere 225.7
2035 Female, age 72, unknown 225.4
2399 Male, age 61, left hemisphere 210.9
2106 Female, age 67, right hemisphere 191.3
1953 Male, age 62, unknown 190.0
Lateral thalamic nuclei
nTPM: 227.3
2573 Female, age 94, left hemisphere 293.5
2765 Female, age 67, both hemispheres 245.7
2661 Female, age 72, unknown 222.4
1903 Male, age 76, left hemisphere 188.6
2577 Male, age 74, both hemispheres 186.3
Medial dorsal thalamic nucleus
nTPM: 199.5
2660 Female, age 72, unknown 249.4
2572 Female, age 94, right hemisphere 243.5
2576 Male, age 74, both hemispheres 219.4
2026 Male, age 62, unknown 204.1
1859 Male, age 76, both hemispheres 200.2
2402 Female, age 67, both hemispheres 197.6
2492 Male, age 75, right hemisphere 196.3
2039 Female, age 72, unknown 190.9
2283 Male, age 80, right hemisphere 186.6
1930 Female, age 42, unknown 183.3
2498 Male, age 66, unknown 180.7
1810 Male, age 48, unknown 173.2
1971 Male, age 61, right hemisphere 168.0
Medial geniculate body
nTPM: 205.4
2207 Male, age 80, right hemisphere 229.0
2650 Female, age 94, left hemisphere 227.6
2217 Female, age 72, unknown 222.0
2657 Male, age 74, right hemisphere 211.2
2049 Male, age 76, both hemispheres 195.1
2571 Male, age 75, right hemisphere 194.4
1811 Female, age 42, unknown 158.1
Nucleus reuniens
nTPM: 233.5
2210 Female, age 85, left hemisphere 275.7
2205 Male, age 80, left hemisphere 251.4
2212 Female, age 67, left hemisphere 173.5
Nucleus rhomboideus
nTPM: 210.9
2280 Female, age 85, left hemisphere 248.0
2213 Female, age 67, left hemisphere 207.9
2206 Male, age 80, both hemispheres 176.8
Posterior thalamic nucleus
nTPM: 202.2
2649 Female, age 94, both hemispheres 236.2
2655 Male, age 74, right hemisphere 208.5
2266 Male, age 76, right hemisphere 183.7
2495 Female, age 67, right hemisphere 180.3
Pulvinar
nTPM: 205.8
2724 Male, age 74, right hemisphere 239.5
1932 Male, age 80, right hemisphere 229.7
2582 Female, age 72, unknown 212.9
1899 Female, age 42, unknown 207.4
2499 Male, age 66, unknown 205.5
2214 Male, age 76, right hemisphere 205.0
2398 Male, age 61, left hemisphere 198.7
1929 Male, age 48, unknown 194.2
1972 Male, age 62, unknown 193.7
2496 Female, age 67, right hemisphere 171.8
Subthalamic nucleus
nTPM: 237.8
2056 Female, age 72, unknown 291.6
2216 Male, age 48, unknown 288.9
2282 Male, age 61, both hemispheres 250.7
2124 Male, age 62, unknown 234.0
2275 Male, age 66, unknown 229.1
2658 Male, age 74, both hemispheres 229.1
2779 Female, age 42, unknown 222.7
2406 Female, age 72, unknown 156.0
Ventral posterolateral thalamic nucleus
nTPM: 210.3
2570 Male, age 75, right hemisphere 241.4
2581 Female, age 72, unknown 234.4
2397 Male, age 61, right hemisphere 203.9
2740 Male, age 76, right hemisphere 199.4
2197 Male, age 80, both hemispheres 197.1
2578 Male, age 74, both hemispheres 185.8
Ventral posteromedial thalamic nucleus
nTPM: 207.6
2281 Male, age 75, right hemisphere 248.6
2127 Male, age 76, right hemisphere 240.3
2758 Male, age 80, both hemispheres 194.2
2653 Male, age 74, both hemispheres 193.6
2202 Male, age 61, left hemisphere 161.3
Ventral thalamic nuclei
nTPM: 227.0
2580 Male, age 66, unknown 251.3
2291 Female, age 72, unknown 248.9
2858 Female, age 72, unknown 242.3
2652 Male, age 74, left hemisphere 228.9
1845 Male, age 48, unknown 227.5
2204 Male, age 80, both hemispheres 226.9
1860 Male, age 76, both hemispheres 219.8
2285 Male, age 62, unknown 207.5
1912 Female, age 42, unknown 189.6
Ventromedial nucleus
nTPM: 129.1
1982 Female, age 72, unknown 131.6
1822 Female, age 42, unknown 126.6
Zona incerta
nTPM: 232.7
2215 Male, age 66, unknown 278.3
2663 Female, age 72, unknown 238.9
2822 Male, age 74, right hemisphere 237.2
2403 Male, age 62, unknown 213.1
2208 Male, age 80, right hemisphere 195.8

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 782.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 782.5
FF:10154-103A1 76 years, female 782.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 52.0
Pig sample Sample description nTPM
Thalamus
nTPM: 52.0
Samples: 4

Max nTPM: 88.4
Min nTPM: 24.6
Sample A Female 24.6
Sample B Female 62.1
Sample C Male 32.9
Sample D Male 88.4

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 55.5
Mouse sample Sample description nTPM
Thalamus
nTPM: 55.6
Samples: 4

Max nTPM: 57.3
Min nTPM: 53.3
Sample A Male 57.3
Sample B Male 54.8
Sample C Female 56.8
Sample D Female 53.3

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.0
638709 Antisense, RP_040831_02_C07, Mouse strain C57BL/6J (56 days, male) 0.0

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