MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:258.7 nTPM
HPA:258.7 nTPM
GTEx:274.2 nTPM
FANTOM5:848.6 Scaled Tags Per Million
Pig:70.7 nTPM
Mouse:48.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 258.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 228.7
1870 Female, age 42, unknown 265.3
1830 Male, age 51, unknown 258.9
1833 Male, age 53, unknown 253.2
2828 Female, age 72, unknown 245.5
2411 Female, age 72, unknown 244.0
2019 Male, age 18, unknown 231.1
2666 Male, age 74, left hemisphere 210.8
1827 Male, age 72, unknown 199.8
2586 Male, age 75, left hemisphere 191.3
2219 Male, age 76, both hemispheres 186.8
Dorsal raphe nucleus
nTPM: 197.9
2750 Male, age 76, both hemispheres 256.8
2016 Female, age 72, unknown 209.7
1828 Male, age 53, unknown 194.4
2298 Female, age 72, unknown 166.5
2047 Male, age 72, unknown 162.0
Inferior colliculus
nTPM: 186.8
2849 Male, age 72, unknown 200.3
1848 Female, age 42, unknown 189.6
1890 Male, age 53, unknown 188.8
2097 Female, age 72, unknown 168.5
Median raphe nucleus
nTPM: 181.0
2220 Male, age 76, midline 181.0
Pedunculopontine tegmental nucleus
nTPM: 212.9
2334 Male, age 80, both hemispheres 230.2
2338 Male, age 61, both hemispheres 216.0
1921 Female, age 85, both hemispheres 192.5
Periaquaductal grey, anterior
nTPM: 190.8
2502 Female, age 75, unknown 209.6
1947 Male, age 18, unknown 188.6
1795 Male, age 51, unknown 174.2
Periaquaductal grey, dorsal
nTPM: 185.3
2464 Female, age 72, unknown 202.4
2850 Male, age 76, both hemispheres 200.1
1831 Male, age 72, unknown 179.5
1840 Male, age 53, unknown 159.3
Periaquaductal grey, lateral
nTPM: 195.0
2140 Male, age 76, both hemispheres 201.6
2053 Male, age 18, unknown 197.1
2272 Male, age 74, both hemispheres 186.2
Pretectal area
nTPM: 194.9
2667 Female, age 75, unknown 232.2
2316 Male, age 76, right hemisphere 226.1
1815 Male, age 53, unknown 214.1
2825 Male, age 18, unknown 197.3
1817 Female, age 42, unknown 192.9
2407 Male, age 75, both hemispheres 192.0
2273 Male, age 74, both hemispheres 190.7
2007 Male, age 72, unknown 182.3
2224 Female, age 72, unknown 180.3
1944 Female, age 72, unknown 173.4
1816 Male, age 51, unknown 162.2
Red nucleus
nTPM: 258.7
1865 Male, age 51, unknown 293.6
2769 Male, age 72, unknown 287.2
2227 Male, age 72, unknown 285.7
2823 Male, age 76, right hemisphere 274.3
1904 Male, age 53, unknown 271.7
1821 Female, age 72, unknown 264.5
2503 Female, age 72, unknown 263.0
2785 Male, age 18, unknown 258.6
1954 Female, age 42, unknown 252.7
2588 Male, age 74, left hemisphere 227.1
2584 Male, age 75, left hemisphere 216.3
2725 Female, age 75, unknown 209.5
Substantia nigra
nTPM: 202.0
2699 Male, age 18, unknown 237.2
1851 Male, age 51, unknown 220.4
2409 Female, age 72, unknown 220.1
2583 Male, age 75, right hemisphere 207.5
2590 Female, age 75, unknown 199.6
1889 Female, age 72, unknown 198.1
1941 Male, age 53, unknown 194.2
2241 Male, age 72, unknown 184.2
1916 Female, age 42, unknown 182.0
2665 Male, age 74, both hemispheres 176.3
Superior colliculus
nTPM: 213.9
1913 Female, age 42, unknown 285.5
1995 Male, age 72, unknown 273.8
1895 Male, age 76, right hemisphere 224.8
1839 Male, age 51, unknown 220.4
2587 Male, age 74, left hemisphere 214.9
1796 Male, age 53, unknown 201.4
2668 Female, age 75, unknown 188.4
2087 Female, age 72, unknown 180.2
2664 Male, age 75, both hemispheres 179.2
2261 Male, age 18, unknown 170.2
Ventral tegmental area
nTPM: 212.9
2223 Female, age 72, unknown 241.0
2410 Female, age 72, unknown 235.3
2218 Male, age 76, both hemispheres 202.6
2021 Male, age 53, unknown 202.4
1915 Female, age 42, unknown 198.9
1942 Male, age 51, unknown 197.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 274.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 274.2
Samples: 139

Max nTPM: 768.5
Min nTPM: 75.8
Std nTPM: 120.5
Median nTPM: 246.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 768.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 683.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 651.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 573.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 518.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 515.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 512.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 506.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 502.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 497.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 492.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 848.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 848.6
FF:10158-103A5 76 years, female 848.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 70.7
Pig sample Sample description nTPM
Midbrain
nTPM: 70.7
Samples: 4

Max nTPM: 119.2
Min nTPM: 27.1
Sample A Female 119.2
Sample B Female 106.2
Sample C Male 30.2
Sample D Male 27.1
Periaqueductal gray
nTPM: 51.8
Samples: 3

Max nTPM: 83.7
Min nTPM: 33.7
Sample B Female 83.7
Sample C Male 33.7
Sample D Male 38.0
Substantia nigra
nTPM: 67.8
Samples: 4

Max nTPM: 86.1
Min nTPM: 45.1
Sample A Female 55.8
Sample B Female 84.1
Sample C Male 45.1
Sample D Male 86.1
Superior colliculi
nTPM: 55.1
Samples: 4

Max nTPM: 60.0
Min nTPM: 48.1
Sample A Female 60.0
Sample B Female 56.5
Sample C Male 48.1
Sample D Male 55.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 48.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.6
Samples: 4

Max nTPM: 50.7
Min nTPM: 45.2
Sample A Male 50.7
Sample B Male 45.2
Sample C Female 48.8
Sample D Female 49.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
638709 Antisense, RP_040831_02_C07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.