MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.1 nTPM
HPA:22.1 nTPM
GTEx:21.8 nTPM
FANTOM5:19.4 Scaled Tags Per Million
Pig:53.6 nTPM
Mouse:22.1 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.8
2219 Male, age 76, both hemispheres 21.7
1827 Male, age 72, unknown 16.1
2666 Male, age 74, left hemisphere 14.5
2411 Female, age 72, unknown 13.1
2019 Male, age 18, unknown 12.5
2828 Female, age 72, unknown 12.4
1833 Male, age 53, unknown 11.8
1870 Female, age 42, unknown 9.1
1830 Male, age 51, unknown 8.9
2586 Male, age 75, left hemisphere 8.0
Dorsal raphe nucleus
nTPM: 11.1
2298 Female, age 72, unknown 14.2
1828 Male, age 53, unknown 13.5
2047 Male, age 72, unknown 9.6
2750 Male, age 76, both hemispheres 9.5
2016 Female, age 72, unknown 8.6
Inferior colliculus
nTPM: 12.2
1848 Female, age 42, unknown 13.3
2097 Female, age 72, unknown 13.2
1890 Male, age 53, unknown 11.5
2849 Male, age 72, unknown 10.9
Median raphe nucleus
nTPM: 12.3
2220 Male, age 76, midline 12.3
Pedunculopontine tegmental nucleus
nTPM: 11.9
1921 Female, age 85, both hemispheres 14.8
2334 Male, age 80, both hemispheres 11.5
2338 Male, age 61, both hemispheres 9.3
Periaquaductal grey, anterior
nTPM: 15.0
1947 Male, age 18, unknown 15.9
1795 Male, age 51, unknown 15.0
2502 Female, age 75, unknown 14.3
Periaquaductal grey, dorsal
nTPM: 12.2
1840 Male, age 53, unknown 13.8
1831 Male, age 72, unknown 13.5
2850 Male, age 76, both hemispheres 11.1
2464 Female, age 72, unknown 10.2
Periaquaductal grey, lateral
nTPM: 12.2
2053 Male, age 18, unknown 13.3
2272 Male, age 74, both hemispheres 12.4
2140 Male, age 76, both hemispheres 10.8
Pretectal area
nTPM: 16.9
1816 Male, age 51, unknown 26.6
1944 Female, age 72, unknown 26.1
2007 Male, age 72, unknown 20.9
1817 Female, age 42, unknown 20.8
1815 Male, age 53, unknown 20.5
2667 Female, age 75, unknown 14.0
2224 Female, age 72, unknown 13.1
2407 Male, age 75, both hemispheres 12.4
2825 Male, age 18, unknown 12.2
2273 Male, age 74, both hemispheres 11.0
2316 Male, age 76, right hemisphere 8.5
Red nucleus
nTPM: 11.5
1821 Female, age 72, unknown 16.9
2725 Female, age 75, unknown 15.5
2588 Male, age 74, left hemisphere 13.2
2503 Female, age 72, unknown 13.0
1954 Female, age 42, unknown 12.0
2785 Male, age 18, unknown 11.4
1904 Male, age 53, unknown 10.9
2584 Male, age 75, left hemisphere 10.7
2227 Male, age 72, unknown 9.0
2769 Male, age 72, unknown 9.0
1865 Male, age 51, unknown 8.7
2823 Male, age 76, right hemisphere 7.9
Substantia nigra
nTPM: 22.1
1916 Female, age 42, unknown 37.0
2241 Male, age 72, unknown 29.2
1851 Male, age 51, unknown 29.1
2409 Female, age 72, unknown 24.6
1889 Female, age 72, unknown 21.7
2699 Male, age 18, unknown 20.2
1941 Male, age 53, unknown 17.0
2665 Male, age 74, both hemispheres 16.6
2590 Female, age 75, unknown 15.1
2583 Male, age 75, right hemisphere 10.4
Superior colliculus
nTPM: 14.0
2087 Female, age 72, unknown 20.9
2668 Female, age 75, unknown 17.6
1796 Male, age 53, unknown 17.5
2261 Male, age 18, unknown 16.4
2587 Male, age 74, left hemisphere 14.9
1895 Male, age 76, right hemisphere 14.2
1913 Female, age 42, unknown 10.8
1839 Male, age 51, unknown 10.5
1995 Male, age 72, unknown 8.9
2664 Male, age 75, both hemispheres 8.6
Ventral tegmental area
nTPM: 17.6
2410 Female, age 72, unknown 28.0
2218 Male, age 76, both hemispheres 22.3
1915 Female, age 42, unknown 21.6
1942 Male, age 51, unknown 14.4
2021 Male, age 53, unknown 10.6
2223 Female, age 72, unknown 9.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.8
Samples: 139

Max nTPM: 62.3
Min nTPM: 9.4
Std nTPM: 9.1
Median nTPM: 20.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 62.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 57.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 56.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 45.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 44.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 43.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 41.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 41.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 41.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 35.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 34.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.4
FF:10158-103A5 76 years, female 19.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.6
Pig sample Sample description nTPM
Midbrain
nTPM: 45.2
Samples: 4

Max nTPM: 62.7
Min nTPM: 27.5
Sample A Female 27.5
Sample B Female 43.6
Sample C Male 62.7
Sample D Male 47.0
Periaqueductal gray
nTPM: 40.9
Samples: 3

Max nTPM: 44.4
Min nTPM: 38.1
Sample B Female 40.3
Sample C Male 44.4
Sample D Male 38.1
Substantia nigra
nTPM: 42.9
Samples: 4

Max nTPM: 50.5
Min nTPM: 29.9
Sample A Female 47.1
Sample B Female 44.1
Sample C Male 50.5
Sample D Male 29.9
Superior colliculi
nTPM: 53.6
Samples: 4

Max nTPM: 64.7
Min nTPM: 46.7
Sample A Female 46.7
Sample B Female 51.5
Sample C Male 64.7
Sample D Male 51.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 24.8
Min nTPM: 19.4
Sample A Male 19.4
Sample B Male 21.6
Sample C Female 24.8
Sample D Female 22.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
70239099 Antisense, RP_050526_04_H09, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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