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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:231.6 nTPM
HPA:123.4 nTPM
GTEx:231.6 nTPM
FANTOM5:271.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA050275
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 123.4
overview
Male, age 65
Small intestine sample 232
nTPM: 139.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 118.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 115.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 119.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 231.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 231.6
Samples: 187

Max nTPM: 401.6
Min nTPM: 107.4
Std nTPM: 64.2
Median nTPM: 226.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 401.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 397.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 380.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 376.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 373.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 361.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 360.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 358.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 356.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 355.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 354.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 347.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 345.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 343.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 339.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 336.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 333.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 332.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 327.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 323.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 323.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 320.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 320.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 318.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 318.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 314.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 311.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 310.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 307.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 295.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 292.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 290.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 289.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 289.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 288.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 286.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 285.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 281.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 279.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 278.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 278.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 278.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 275.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 273.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 272.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 271.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 269.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 267.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 267.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 267.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 266.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 265.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 263.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 263.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 260.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 258.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 257.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 257.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 256.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 256.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 256.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 253.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 253.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 252.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 250.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 248.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 246.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 245.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 245.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 245.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 244.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 243.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 240.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 239.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 239.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 239.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 238.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 238.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 237.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 237.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 237.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 236.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 235.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 235.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 231.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 231.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 230.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 230.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 230.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 229.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 229.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 229.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 226.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 226.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 225.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 224.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 224.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 224.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 223.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 223.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 221.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 220.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 216.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 214.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 214.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 213.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 213.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 212.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 211.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 211.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 209.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 209.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 209.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 208.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 207.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 207.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 206.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 203.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 202.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 202.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 201.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 200.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 199.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 198.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 198.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 198.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 197.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 195.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 195.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 195.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 195.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 191.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 189.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 188.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 185.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 184.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 184.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 183.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 181.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 181.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 181.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 180.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 179.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 179.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 179.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 177.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 176.8
GTEX-1192X-2526-SM-59868 50-59 years, male 175.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 174.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 174.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 174.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 174.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 174.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 172.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 171.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 169.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 167.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 166.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 165.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 164.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 164.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 163.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 161.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 159.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 158.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 157.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 156.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 155.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 153.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 152.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 151.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 147.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 147.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 142.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 138.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 137.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 136.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 136.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 135.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 132.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 132.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 130.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 127.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 122.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 121.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 118.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 107.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 271.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 271.9
FF:10024-101D6 15,40,85 years, mixed 271.9

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