MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:26.4 nTPM
HPA:26.4 nTPM
GTEx:13.1 nTPM
FANTOM5:11.0 Scaled Tags Per Million
Pig:77.9 nTPM
Mouse:57.2 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.4
2586 Male, age 75, left hemisphere 29.0
1827 Male, age 72, unknown 24.7
2019 Male, age 18, unknown 24.7
2828 Female, age 72, unknown 23.9
2411 Female, age 72, unknown 22.8
1833 Male, age 53, unknown 22.2
1870 Female, age 42, unknown 22.0
2666 Male, age 74, left hemisphere 21.8
2219 Male, age 76, both hemispheres 21.6
1830 Male, age 51, unknown 20.9
Dorsal raphe nucleus
nTPM: 20.5
1828 Male, age 53, unknown 21.3
2298 Female, age 72, unknown 20.7
2750 Male, age 76, both hemispheres 20.5
2016 Female, age 72, unknown 20.1
2047 Male, age 72, unknown 19.7
Inferior colliculus
nTPM: 23.7
2097 Female, age 72, unknown 26.3
1890 Male, age 53, unknown 23.8
1848 Female, age 42, unknown 23.0
2849 Male, age 72, unknown 21.6
Median raphe nucleus
nTPM: 19.7
2220 Male, age 76, midline 19.7
Pedunculopontine tegmental nucleus
nTPM: 21.5
1921 Female, age 85, both hemispheres 25.2
2334 Male, age 80, both hemispheres 20.8
2338 Male, age 61, both hemispheres 18.4
Periaquaductal grey, anterior
nTPM: 23.9
1795 Male, age 51, unknown 25.0
2502 Female, age 75, unknown 23.9
1947 Male, age 18, unknown 23.0
Periaquaductal grey, dorsal
nTPM: 22.2
1831 Male, age 72, unknown 24.2
1840 Male, age 53, unknown 22.9
2464 Female, age 72, unknown 21.9
2850 Male, age 76, both hemispheres 19.9
Periaquaductal grey, lateral
nTPM: 21.6
2053 Male, age 18, unknown 23.7
2140 Male, age 76, both hemispheres 20.6
2272 Male, age 74, both hemispheres 20.6
Pretectal area
nTPM: 26.4
2007 Male, age 72, unknown 32.7
1816 Male, age 51, unknown 32.6
1817 Female, age 42, unknown 30.5
1944 Female, age 72, unknown 30.2
1815 Male, age 53, unknown 28.4
2407 Male, age 75, both hemispheres 25.5
2667 Female, age 75, unknown 24.7
2273 Male, age 74, both hemispheres 22.9
2825 Male, age 18, unknown 21.2
2316 Male, age 76, right hemisphere 20.8
2224 Female, age 72, unknown 20.3
Red nucleus
nTPM: 22.9
2785 Male, age 18, unknown 24.6
1821 Female, age 72, unknown 23.8
2588 Male, age 74, left hemisphere 23.4
2725 Female, age 75, unknown 23.4
1904 Male, age 53, unknown 23.2
2503 Female, age 72, unknown 23.0
2584 Male, age 75, left hemisphere 23.0
2823 Male, age 76, right hemisphere 22.9
1865 Male, age 51, unknown 22.3
1954 Female, age 42, unknown 22.2
2227 Male, age 72, unknown 21.6
2769 Male, age 72, unknown 21.5
Substantia nigra
nTPM: 22.5
1889 Female, age 72, unknown 29.0
2583 Male, age 75, right hemisphere 24.9
2590 Female, age 75, unknown 22.7
2409 Female, age 72, unknown 22.6
2665 Male, age 74, both hemispheres 22.0
1851 Male, age 51, unknown 21.9
1916 Female, age 42, unknown 21.7
1941 Male, age 53, unknown 20.8
2241 Male, age 72, unknown 20.2
2699 Male, age 18, unknown 19.4
Superior colliculus
nTPM: 24.9
2261 Male, age 18, unknown 29.3
2087 Female, age 72, unknown 27.7
2664 Male, age 75, both hemispheres 26.6
1995 Male, age 72, unknown 24.8
2668 Female, age 75, unknown 24.7
1796 Male, age 53, unknown 24.4
1895 Male, age 76, right hemisphere 24.1
1913 Female, age 42, unknown 24.0
1839 Male, age 51, unknown 22.5
2587 Male, age 74, left hemisphere 21.2
Ventral tegmental area
nTPM: 21.2
2410 Female, age 72, unknown 23.1
2218 Male, age 76, both hemispheres 21.7
1942 Male, age 51, unknown 21.2
2223 Female, age 72, unknown 21.0
1915 Female, age 42, unknown 20.4
2021 Male, age 53, unknown 20.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.1
Samples: 139

Max nTPM: 24.3
Min nTPM: 7.6
Std nTPM: 2.5
Median nTPM: 12.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 24.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 20.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 19.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 18.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 18.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 18.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 17.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 17.2
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 17.1
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 16.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 16.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.0
FF:10158-103A5 76 years, female 11.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 77.9
Pig sample Sample description nTPM
Midbrain
nTPM: 78.0
Samples: 4

Max nTPM: 133.8
Min nTPM: 53.8
Sample A Female 133.8
Sample B Female 68.9
Sample C Male 55.3
Sample D Male 53.8
Periaqueductal gray
nTPM: 48.8
Samples: 3

Max nTPM: 55.7
Min nTPM: 45.1
Sample B Female 55.7
Sample C Male 45.1
Sample D Male 45.5
Substantia nigra
nTPM: 67.1
Samples: 4

Max nTPM: 81.0
Min nTPM: 42.4
Sample A Female 79.9
Sample B Female 42.4
Sample C Male 65.0
Sample D Male 81.0
Superior colliculi
nTPM: 60.1
Samples: 4

Max nTPM: 74.7
Min nTPM: 35.3
Sample A Female 74.7
Sample B Female 35.3
Sample C Male 61.2
Sample D Male 69.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.2
Samples: 4

Max nTPM: 58.6
Min nTPM: 55.1
Sample A Male 57.5
Sample B Male 57.7
Sample C Female 55.1
Sample D Female 58.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
74657931 Antisense, RP_060220_02_F10, Mouse strain C57BL/6J (56 days, male) 1.1
68919018 Antisense, RP_050301_02_D06, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.