BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:17.1 nTPM
HPA:17.1 nTPM
GTEx:14.5 nTPM
FANTOM5:70.8 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA044125Antibody CAB034082
Glial cells Not detectedLow
Neuronal cells LowHigh




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 17.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.5
2481 Female, age 94, left hemisphere 19.2
1857 Female, age 85, left hemisphere 16.4
2846 Female, age 79, unknown 16.0
2288 Male, age 75, left hemisphere 15.1
1854 Male, age 80, left hemisphere 14.9
1781 Male, age 74, unknown 14.8
2290 Female, age 72, unknown 14.2
2289 Male, age 61, right hemisphere 13.5
Claustrum
nTPM: 14.6
2392 Female, age 94, both hemispheres 17.0
2491 Male, age 75, both hemispheres 16.7
1956 Male, age 74, unknown 15.7
2198 Male, age 80, both hemispheres 15.2
2196 Female, age 79, unknown 13.8
2292 Female, age 85, both hemispheres 13.8
2284 Female, age 91, both hemispheres 13.7
2645 Female, age 72, unknown 13.2
2568 Male, age 61, both hemispheres 12.5
Globus pallidus, externus
nTPM: 13.9
2395 Male, age 75, both hemispheres 17.0
2772 Female, age 79, unknown 15.1
1996 Male, age 80, right hemisphere 13.3
2646 Male, age 61, right hemisphere 12.7
2567 Female, age 72, unknown 11.5
Globus pallidus, internus
nTPM: 14.7
2483 Female, age 94, right hemisphere 18.8
2287 Male, age 75, right hemisphere 16.0
2778 Female, age 91, both hemispheres 15.0
1818 Male, age 74, unknown 14.8
2037 Male, age 80, right hemisphere 13.2
2111 Female, age 85, right hemisphere 13.1
2566 Female, age 72, unknown 11.6
Nucleus accumbens
nTPM: 16.1
2391 Female, age 94, left hemisphere 20.9
2286 Male, age 75, left hemisphere 17.6
1856 Female, age 91, right hemisphere 17.5
1783 Male, age 74, unknown 16.6
2698 Female, age 72, unknown 15.4
1806 Female, age 85, left hemisphere 14.9
2732 Male, age 80, right hemisphere 13.1
2824 Male, age 61, right hemisphere 12.6
Nucleus basalis of Meynert
nTPM: 14.2
2484 Female, age 94, left hemisphere 17.6
2393 Male, age 80, right hemisphere 14.0
2821 Male, age 75, both hemispheres 13.0
2569 Male, age 61, both hemispheres 12.1
Nucleus of the diagonal band
nTPM: 17.1
1812 Female, age 91, both hemispheres 19.9
2775 Male, age 80, right hemisphere 19.0
2195 Female, age 85, both hemispheres 17.3
1979 Male, age 74, unknown 15.0
2029 Male, age 61, right hemisphere 14.3
Olfactory tubercle
nTPM: 16.5
1846 Male, age 80, right hemisphere 18.0
1998 Female, age 91, both hemispheres 17.2
2856 Male, age 75, right hemisphere 17.2
2487 Female, age 94, left hemisphere 13.7
Putamen
nTPM: 14.3
2466 Female, age 79, unknown 16.4
1937 Female, age 91, right hemisphere 15.7
2482 Female, age 94, left hemisphere 15.4
1838 Male, age 80, right hemisphere 15.0
1829 Male, age 74, unknown 14.5
2647 Male, age 75, left hemisphere 12.3
2489 Female, age 72, unknown 11.1
Septal nuclei
nTPM: 16.1
2031 Female, age 72, unknown 21.9
1960 Male, age 74, unknown 18.0
2009 Female, age 91, both hemispheres 17.9
2199 Male, age 80, right hemisphere 15.2
2394 Male, age 61, left hemisphere 13.5
2629 Female, age 94, right hemisphere 13.2
2059 Female, age 85, both hemispheres 12.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.8
Samples: 246

Max nTPM: 35.5
Min nTPM: 7.6
Std nTPM: 3.5
Median nTPM: 13.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 35.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 34.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 27.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 25.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 24.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 24.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 22.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 22.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 21.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 21.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 20.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.5
Samples: 246

Max nTPM: 29.2
Min nTPM: 8.6
Std nTPM: 3.3
Median nTPM: 14.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 29.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 25.8
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 25.5
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 24.8
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 24.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 24.0
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 23.7
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 23.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 23.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 23.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 22.9
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Brain - Putamen (basal ganglia)
Average nTPM: 13.0
Samples: 205

Max nTPM: 22.9
Min nTPM: 7.2
Std nTPM: 2.8
Median nTPM: 12.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 22.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 22.6
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 22.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 22.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 21.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 21.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 20.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 20.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 20.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 19.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 18.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 54.1
FF:10164-103B2 76 years, female 54.1
Globus pallidus
Scaled Tags Per Million: 55.6
FF:10175-103C4 60 years, female 72.6
FF:10161-103A8 76 years, female 38.6
Nucleus accumbens
Scaled Tags Per Million: 70.8
FF:10037-101F1 23-56 years, mixed 70.8
Putamen
Scaled Tags Per Million: 70.8
FF:10176-103C5 60 years, female 70.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.