MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:394.7 nTPM
HPA:394.7 nTPM
GTEx:221.9 nTPM
FANTOM5:411.5 Scaled Tags Per Million
Mouse:172.5 nTPM
Allen mouse:9.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 394.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 380.6
1870 Female, age 42, unknown 393.3
2019 Male, age 18, unknown 392.9
2411 Female, age 72, unknown 388.4
1833 Male, age 53, unknown 383.4
1830 Male, age 51, unknown 380.4
1827 Male, age 72, unknown 379.4
2219 Male, age 76, both hemispheres 379.2
2828 Female, age 72, unknown 375.8
2666 Male, age 74, left hemisphere 368.3
2586 Male, age 75, left hemisphere 364.6
Dorsal raphe nucleus
nTPM: 388.0
2298 Female, age 72, unknown 400.1
1828 Male, age 53, unknown 389.3
2047 Male, age 72, unknown 387.3
2016 Female, age 72, unknown 383.1
2750 Male, age 76, both hemispheres 380.3
Inferior colliculus
nTPM: 383.9
2097 Female, age 72, unknown 390.8
1890 Male, age 53, unknown 384.5
1848 Female, age 42, unknown 381.3
2849 Male, age 72, unknown 378.9
Median raphe nucleus
nTPM: 392.6
2220 Male, age 76, midline 392.6
Pedunculopontine tegmental nucleus
nTPM: 394.7
2334 Male, age 80, both hemispheres 398.6
2338 Male, age 61, both hemispheres 393.0
1921 Female, age 85, both hemispheres 392.5
Periaquaductal grey, anterior
nTPM: 381.5
2502 Female, age 75, unknown 385.0
1947 Male, age 18, unknown 383.4
1795 Male, age 51, unknown 376.2
Periaquaductal grey, dorsal
nTPM: 382.5
2850 Male, age 76, both hemispheres 390.8
2464 Female, age 72, unknown 380.2
1831 Male, age 72, unknown 380.0
1840 Male, age 53, unknown 379.1
Periaquaductal grey, lateral
nTPM: 383.0
2140 Male, age 76, both hemispheres 387.2
2272 Male, age 74, both hemispheres 381.8
2053 Male, age 18, unknown 380.1
Pretectal area
nTPM: 387.6
2273 Male, age 74, both hemispheres 392.1
2007 Male, age 72, unknown 391.3
1817 Female, age 42, unknown 390.8
2224 Female, age 72, unknown 390.6
1816 Male, age 51, unknown 390.4
1944 Female, age 72, unknown 388.2
2667 Female, age 75, unknown 387.1
1815 Male, age 53, unknown 386.5
2407 Male, age 75, both hemispheres 385.3
2825 Male, age 18, unknown 381.9
2316 Male, age 76, right hemisphere 379.6
Red nucleus
nTPM: 385.3
1821 Female, age 72, unknown 399.6
2725 Female, age 75, unknown 394.4
1954 Female, age 42, unknown 390.5
1865 Male, age 51, unknown 388.9
2503 Female, age 72, unknown 388.2
1904 Male, age 53, unknown 386.1
2785 Male, age 18, unknown 386.0
2823 Male, age 76, right hemisphere 385.8
2227 Male, age 72, unknown 382.7
2769 Male, age 72, unknown 381.0
2584 Male, age 75, left hemisphere 374.1
2588 Male, age 74, left hemisphere 365.6
Substantia nigra
nTPM: 385.0
1889 Female, age 72, unknown 398.1
2241 Male, age 72, unknown 396.3
1916 Female, age 42, unknown 390.7
1941 Male, age 53, unknown 390.0
1851 Male, age 51, unknown 389.7
2699 Male, age 18, unknown 380.3
2409 Female, age 72, unknown 379.3
2590 Female, age 75, unknown 379.2
2665 Male, age 74, both hemispheres 374.3
2583 Male, age 75, right hemisphere 372.4
Superior colliculus
nTPM: 381.7
2587 Male, age 74, left hemisphere 395.0
1895 Male, age 76, right hemisphere 388.4
2087 Female, age 72, unknown 385.2
1913 Female, age 42, unknown 385.1
1796 Male, age 53, unknown 381.1
1995 Male, age 72, unknown 380.2
2261 Male, age 18, unknown 377.5
1839 Male, age 51, unknown 377.1
2668 Female, age 75, unknown 375.0
2664 Male, age 75, both hemispheres 372.5
Ventral tegmental area
nTPM: 383.1
2410 Female, age 72, unknown 391.6
1915 Female, age 42, unknown 386.1
2223 Female, age 72, unknown 384.9
2218 Male, age 76, both hemispheres 381.1
1942 Male, age 51, unknown 380.3
2021 Male, age 53, unknown 374.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 221.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 221.9
Samples: 139

Max nTPM: 950.5
Min nTPM: 103.7
Std nTPM: 127.8
Median nTPM: 181.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 950.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 854.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 676.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 674.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 648.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 600.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 517.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 395.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 389.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 369.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 361.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 411.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 411.5
FF:10158-103A5 76 years, female 411.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 172.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 172.5
Samples: 4

Max nTPM: 182.6
Min nTPM: 160.3
Sample A Male 180.2
Sample B Male 166.9
Sample C Female 160.3
Sample D Female 182.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
68499485 Antisense, RP_050118_01_F05, Mouse strain C57BL/6J (56 days, male) 9.3

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