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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:166.0 nTPM
GTEx:166.0 nTPM
FANTOM5:45.3 Scaled Tags Per Million
Pig:76.7 nTPM
Mouse:5.1 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 166.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 166.0
Samples: 105

Max nTPM: 293.3
Min nTPM: 83.1
Std nTPM: 37.1
Median nTPM:
375_1 74 years, female 293.3
42_1 85 years, male 287.2
379_1 60 years, male 253.9
142_1 61 years, female 234.7
99_1 64 years, male 234.4
35_1 74 years, female 230.5
347_1 72 years, male 223.8
319_1 81 years, male 219.9
414_1 84 years, female 216.6
237_1 82 years, male 215.9
394_1 75 years, female 206.8
172_1 72 years, female 203.6
117_1 61 years, male 200.4
115_1 83 years, male 199.7
218_1 71 years, female 198.8
243_1 75 years, male 197.4
415_1 77 years, female 196.8
396_1 62 years, male 195.6
6_1 73 years, female 193.9
352_1 62 years, male 193.6
384_1 83 years, male 192.9
4_1 88 years, female 191.8
177_1 74 years, male 191.1
120_1 70 years, female 190.7
137_1 83 years, male 190.6
503_1 68 years, male 188.8
109_1 81 years, female 187.3
119_1 70 years, female 186.7
229_1 69 years, female 186.6
41_1 94 years, female 186.2
447_1 81 years, male 184.4
324_1 76 years, male 183.4
389_1 86 years, female 183.3
413_1 59 years, female 182.4
313_1 79 years, female 180.4
266_1 85 years, male 179.8
153_1 70 years, female 178.7
356_1 87 years, female 178.3
162_1 79 years, female 178.0
173_1 67 years, male 177.7
376_1 75 years, female 177.2
355_1 70 years, female 176.5
499_1 55 years, female 176.0
126_1 63 years, male 175.9
349_1 83 years, male 174.7
189_1 76 years, male 173.9
286_1 68 years, female 172.0
506_1 65 years, male 171.5
354_1 81 years, female 170.9
9_1 66 years, female 169.2
526_1 61 years, male 168.5
32_1 67 years, male 168.0
315_1 62 years, female 166.8
490_1 67 years, female 164.2
246_1 77 years, male 162.8
404_1 82 years, female 162.7
452_1 88 years, female 161.7
17_1 71 years, male 161.2
425_1 59 years, female 160.8
163_1 78 years, male 159.0
316_1 62 years, male 158.9
265_1 87 years, male 155.4
386_1 76 years, male 155.0
145_1 84 years, male 152.2
81_1 67 years, male 150.0
377_1 82 years, female 150.0
406_1 79 years, male 149.3
318_1 68 years, male 148.6
314_1 67 years, male 148.0
264_1 73 years, female 147.7
254_1 77 years, female 146.5
139_1 64 years, female 145.9
311_1 78 years, male 143.9
468_1 89 years, male 143.2
292_1 71 years, male 141.8
518_1 75 years, female 141.7
405_1 91 years, male 140.7
335_1 73 years, female 139.5
321_1 62 years, female 138.9
350_1 84 years, female 137.3
317_1 60 years, male 137.2
295_1 61 years, female 136.2
307_1 66 years, female 136.0
43_1 64 years, female 133.4
353_1 82 years, female 130.3
348_1 84 years, male 128.9
480_1 63 years, male 127.8
293_1 68 years, female 126.9
351_1 91 years, male 126.1
89_1 63 years, male 125.0
18_1 88 years, male 124.1
251_1 78 years, male 124.0
517_1 88 years, male 123.7
501_1 88 years, male 123.1
320_1 89 years, female 120.2
217_1 76 years, male 119.4
288_1 66 years, female 117.9
291_1 76 years, male 117.5
2_1 77 years, female 116.3
466_1 57 years, female 113.1
308_1 70 years, female 112.1
491_1 89 years, female 111.6
322_1 76 years, male 109.9
149_1 88 years, male 101.6
495_1 57 years, female 83.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 45.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 45.3
FF:10030-101E3 24-65 years, mixed 45.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.7
Pig sample Sample description nTPM
Retina
nTPM: 76.7
Samples: 4

Max nTPM: 90.3
Min nTPM: 58.1
Sample A Female 82.6
Sample B Female 58.1
Sample C Male 90.3
Sample D Male 75.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 5.1
Mouse sample Sample description nTPM
Retina
nTPM: 5.1
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.2
Sample A Male 6.2
Sample B Male 5.4
Sample C Female 4.2
Sample D Female 4.4

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.