BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:48.9 nTPM
HPA:48.9 nTPM
GTEx:88.1 nTPM
FANTOM5:91.5 Scaled Tags Per Million
Pig:48.8 nTPM
Mouse:117.1 nTPM
Allen mouse:17.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA047147
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.3
1857 Female, age 85, left hemisphere 50.6
2290 Female, age 72, unknown 50.3
2846 Female, age 79, unknown 45.8
1854 Male, age 80, left hemisphere 44.8
1781 Male, age 74, unknown 43.9
2289 Male, age 61, right hemisphere 38.8
2288 Male, age 75, left hemisphere 36.2
2481 Female, age 94, left hemisphere 35.6
Claustrum
nTPM: 48.9
2645 Female, age 72, unknown 59.5
2284 Female, age 91, both hemispheres 51.7
2568 Male, age 61, both hemispheres 50.8
2491 Male, age 75, both hemispheres 49.1
2198 Male, age 80, both hemispheres 48.4
2196 Female, age 79, unknown 47.9
1956 Male, age 74, unknown 46.8
2292 Female, age 85, both hemispheres 46.1
2392 Female, age 94, both hemispheres 39.5
Globus pallidus, externus
nTPM: 33.9
2646 Male, age 61, right hemisphere 39.3
2567 Female, age 72, unknown 37.1
2772 Female, age 79, unknown 35.0
2395 Male, age 75, both hemispheres 29.7
1996 Male, age 80, right hemisphere 28.4
Globus pallidus, internus
nTPM: 32.8
2483 Female, age 94, right hemisphere 36.0
2287 Male, age 75, right hemisphere 34.7
2111 Female, age 85, right hemisphere 34.3
2566 Female, age 72, unknown 34.3
2778 Female, age 91, both hemispheres 31.5
2037 Male, age 80, right hemisphere 29.3
1818 Male, age 74, unknown 29.2
Nucleus accumbens
nTPM: 44.8
1783 Male, age 74, unknown 54.8
1856 Female, age 91, right hemisphere 52.7
1806 Female, age 85, left hemisphere 52.3
2824 Male, age 61, right hemisphere 49.7
2286 Male, age 75, left hemisphere 40.5
2698 Female, age 72, unknown 40.5
2732 Male, age 80, right hemisphere 37.0
2391 Female, age 94, left hemisphere 31.3
Nucleus basalis of Meynert
nTPM: 40.2
2569 Male, age 61, both hemispheres 42.8
2484 Female, age 94, left hemisphere 40.4
2393 Male, age 80, right hemisphere 39.1
2821 Male, age 75, both hemispheres 38.5
Nucleus of the diagonal band
nTPM: 46.9
2775 Male, age 80, right hemisphere 52.2
2029 Male, age 61, right hemisphere 48.6
2195 Female, age 85, both hemispheres 47.3
1812 Female, age 91, both hemispheres 43.8
1979 Male, age 74, unknown 42.5
Olfactory tubercle
nTPM: 47.6
1998 Female, age 91, both hemispheres 52.5
2487 Female, age 94, left hemisphere 47.0
1846 Male, age 80, right hemisphere 46.2
2856 Male, age 75, right hemisphere 44.7
Putamen
nTPM: 45.6
2466 Female, age 79, unknown 50.8
2647 Male, age 75, left hemisphere 48.0
1838 Male, age 80, right hemisphere 47.3
2489 Female, age 72, unknown 47.2
1937 Female, age 91, right hemisphere 47.1
1829 Male, age 74, unknown 46.0
2482 Female, age 94, left hemisphere 33.1
Septal nuclei
nTPM: 43.0
1960 Male, age 74, unknown 55.2
2031 Female, age 72, unknown 49.9
2059 Female, age 85, both hemispheres 45.6
2009 Female, age 91, both hemispheres 41.2
2394 Male, age 61, left hemisphere 39.0
2199 Male, age 80, right hemisphere 35.6
2629 Female, age 94, right hemisphere 34.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 88.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 73.1
Samples: 246

Max nTPM: 123.8
Min nTPM: 34.3
Std nTPM: 19.8
Median nTPM: 71.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 123.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 123.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 119.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 118.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 118.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 115.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 115.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 114.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 113.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 112.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 111.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 88.1
Samples: 246

Max nTPM: 151.2
Min nTPM: 34.8
Std nTPM: 23.1
Median nTPM: 90.2
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 151.2
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 147.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 135.5
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 128.1
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 126.7
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 126.1
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 125.8
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 124.7
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 124.2
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 123.9
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 123.7
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Brain - Putamen (basal ganglia)
Average nTPM: 72.3
Samples: 205

Max nTPM: 125.9
Min nTPM: 40.4
Std nTPM: 19.1
Median nTPM: 67.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 125.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 121.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 120.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 120.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 116.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 116.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 113.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 113.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 110.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 108.7
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 108.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 81.5
FF:10164-103B2 76 years, female 81.5
Globus pallidus
Scaled Tags Per Million: 55.7
FF:10175-103C4 60 years, female 59.9
FF:10161-103A8 76 years, female 51.4
Nucleus accumbens
Scaled Tags Per Million: 89.5
FF:10037-101F1 23-56 years, mixed 89.5
Putamen
Scaled Tags Per Million: 91.5
FF:10176-103C5 60 years, female 91.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 48.8
Pig sample Sample description nTPM
Caudate
nTPM: 48.8
Samples: 4

Max nTPM: 59.7
Min nTPM: 39.3
Sample A Female 39.3
Sample B Female 51.0
Sample C Male 59.7
Sample D Male 45.2
Putamen
nTPM: 46.0
Samples: 4

Max nTPM: 57.1
Min nTPM: 33.3
Sample A Female 33.3
Sample B Female 39.1
Sample C Male 57.1
Sample D Male 54.6
Septum
nTPM: 40.4
Samples: 4

Max nTPM: 43.2
Min nTPM: 35.4
Sample A Female 42.3
Sample B Female 40.5
Sample C Male 43.2
Sample D Male 35.4
Ventral pallidum
nTPM: 42.6
Samples: 4

Max nTPM: 51.0
Min nTPM: 37.2
Sample A Female 37.2
Sample B Female 42.7
Sample C Male 51.0
Sample D Male 39.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 117.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 99.2
Samples: 4

Max nTPM: 102.8
Min nTPM: 96.0
Sample A Male 99.3
Sample B Male 96.0
Sample C Female 98.8
Sample D Female 102.8
Septum
nTPM: 100.4
Samples: 4

Max nTPM: 108.4
Min nTPM: 89.7
Sample A Male 106.8
Sample B Male 108.4
Sample C Female 96.5
Sample D Female 89.7
Ventral forebrain
nTPM: 117.2
Samples: 4

Max nTPM: 126.5
Min nTPM: 105.5
Sample A Male 122.9
Sample B Male 113.7
Sample C Female 105.5
Sample D Female 126.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 17.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 17.3
68667823 Antisense, RP_050201_02_H07, Mouse strain C57BL/6J (56 days, male) 17.3
Pallidum
Expression energy: 15.4
68667823 Antisense, RP_050201_02_H07, Mouse strain C57BL/6J (56 days, male) 15.4

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The Human Protein Atlas

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