MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:69.4 nTPM
HPA:69.4 nTPM
GTEx:66.9 nTPM
FANTOM5:97.7 Scaled Tags Per Million
Pig:141.5 nTPM
Mouse:225.4 nTPM
Allen mouse:8.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 69.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.9
2219 Male, age 76, both hemispheres 77.6
2411 Female, age 72, unknown 64.6
2586 Male, age 75, left hemisphere 59.6
1827 Male, age 72, unknown 58.2
2666 Male, age 74, left hemisphere 57.1
2019 Male, age 18, unknown 56.7
1870 Female, age 42, unknown 54.0
1833 Male, age 53, unknown 52.6
1830 Male, age 51, unknown 49.7
2828 Female, age 72, unknown 48.9
Dorsal raphe nucleus
nTPM: 59.0
2298 Female, age 72, unknown 64.2
1828 Male, age 53, unknown 64.1
2047 Male, age 72, unknown 62.2
2750 Male, age 76, both hemispheres 59.8
2016 Female, age 72, unknown 44.7
Inferior colliculus
nTPM: 53.2
2097 Female, age 72, unknown 59.6
1890 Male, age 53, unknown 53.1
1848 Female, age 42, unknown 52.8
2849 Male, age 72, unknown 47.2
Median raphe nucleus
nTPM: 61.5
2220 Male, age 76, midline 61.5
Pedunculopontine tegmental nucleus
nTPM: 56.0
2334 Male, age 80, both hemispheres 64.8
1921 Female, age 85, both hemispheres 55.9
2338 Male, age 61, both hemispheres 47.4
Periaquaductal grey, anterior
nTPM: 56.7
2502 Female, age 75, unknown 59.2
1947 Male, age 18, unknown 58.4
1795 Male, age 51, unknown 52.5
Periaquaductal grey, dorsal
nTPM: 46.3
1840 Male, age 53, unknown 51.4
2464 Female, age 72, unknown 48.3
1831 Male, age 72, unknown 44.8
2850 Male, age 76, both hemispheres 40.6
Periaquaductal grey, lateral
nTPM: 42.3
2053 Male, age 18, unknown 43.6
2272 Male, age 74, both hemispheres 43.0
2140 Male, age 76, both hemispheres 40.3
Pretectal area
nTPM: 54.5
1816 Male, age 51, unknown 65.2
2007 Male, age 72, unknown 64.5
1944 Female, age 72, unknown 62.2
1817 Female, age 42, unknown 61.3
1815 Male, age 53, unknown 56.7
2667 Female, age 75, unknown 52.8
2825 Male, age 18, unknown 51.5
2224 Female, age 72, unknown 50.8
2407 Male, age 75, both hemispheres 48.5
2316 Male, age 76, right hemisphere 45.0
2273 Male, age 74, both hemispheres 40.5
Red nucleus
nTPM: 55.6
1821 Female, age 72, unknown 70.0
2584 Male, age 75, left hemisphere 60.1
1954 Female, age 42, unknown 56.5
2227 Male, age 72, unknown 56.5
2725 Female, age 75, unknown 55.3
2769 Male, age 72, unknown 54.9
2588 Male, age 74, left hemisphere 54.4
1904 Male, age 53, unknown 54.3
2785 Male, age 18, unknown 53.3
1865 Male, age 51, unknown 52.4
2503 Female, age 72, unknown 52.2
2823 Male, age 76, right hemisphere 47.2
Substantia nigra
nTPM: 69.4
1916 Female, age 42, unknown 96.8
1851 Male, age 51, unknown 78.5
2241 Male, age 72, unknown 77.8
1941 Male, age 53, unknown 69.2
2409 Female, age 72, unknown 66.6
1889 Female, age 72, unknown 65.5
2699 Male, age 18, unknown 63.6
2583 Male, age 75, right hemisphere 61.0
2665 Male, age 74, both hemispheres 57.7
2590 Female, age 75, unknown 56.8
Superior colliculus
nTPM: 51.0
2668 Female, age 75, unknown 59.4
2087 Female, age 72, unknown 58.2
2261 Male, age 18, unknown 56.0
1796 Male, age 53, unknown 51.9
1839 Male, age 51, unknown 51.3
1895 Male, age 76, right hemisphere 50.6
2664 Male, age 75, both hemispheres 49.6
2587 Male, age 74, left hemisphere 49.5
1913 Female, age 42, unknown 44.2
1995 Male, age 72, unknown 39.8
Ventral tegmental area
nTPM: 64.2
2410 Female, age 72, unknown 76.0
1915 Female, age 42, unknown 72.3
2218 Male, age 76, both hemispheres 68.4
1942 Male, age 51, unknown 59.6
2223 Female, age 72, unknown 56.3
2021 Male, age 53, unknown 52.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.9
Samples: 139

Max nTPM: 156.8
Min nTPM: 32.7
Std nTPM: 23.6
Median nTPM: 57.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 156.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 150.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 136.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 136.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 124.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 119.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 114.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 112.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 110.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 102.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 102.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.7
FF:10158-103A5 76 years, female 97.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 141.5
Pig sample Sample description nTPM
Midbrain
nTPM: 138.5
Samples: 4

Max nTPM: 163.3
Min nTPM: 127.7
Sample A Female 133.5
Sample B Female 127.7
Sample C Male 163.3
Sample D Male 129.4
Periaqueductal gray
nTPM: 102.2
Samples: 3

Max nTPM: 112.2
Min nTPM: 84.7
Sample B Female 109.7
Sample C Male 112.2
Sample D Male 84.7
Substantia nigra
nTPM: 118.1
Samples: 4

Max nTPM: 160.5
Min nTPM: 87.3
Sample A Female 160.5
Sample B Female 95.2
Sample C Male 129.2
Sample D Male 87.3
Superior colliculi
nTPM: 141.5
Samples: 4

Max nTPM: 166.1
Min nTPM: 109.2
Sample A Female 161.8
Sample B Female 109.2
Sample C Male 166.1
Sample D Male 128.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 225.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 225.5
Samples: 4

Max nTPM: 228.8
Min nTPM: 221.7
Sample A Male 223.1
Sample B Male 228.2
Sample C Female 228.8
Sample D Female 221.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
69028402 Antisense, RP_050316_01_C04, Mouse strain C57BL/6J (56 days, male) 8.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.