MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.5 nTPM
HPA:34.5 nTPM
GTEx:21.2 nTPM
FANTOM5:87.4 Scaled Tags Per Million
Pig:51.3 nTPM
Mouse:74.9 nTPM
Allen mouse:9.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.4
1870 Female, age 42, unknown 36.8
1833 Male, age 53, unknown 34.9
2411 Female, age 72, unknown 34.7
1830 Male, age 51, unknown 34.1
1827 Male, age 72, unknown 32.9
2586 Male, age 75, left hemisphere 32.9
2666 Male, age 74, left hemisphere 32.2
2019 Male, age 18, unknown 32.1
2219 Male, age 76, both hemispheres 31.8
2828 Female, age 72, unknown 31.8
Dorsal raphe nucleus
nTPM: 33.1
2750 Male, age 76, both hemispheres 35.1
1828 Male, age 53, unknown 33.5
2047 Male, age 72, unknown 33.3
2298 Female, age 72, unknown 32.6
2016 Female, age 72, unknown 31.1
Inferior colliculus
nTPM: 32.9
1848 Female, age 42, unknown 33.5
2849 Male, age 72, unknown 33.4
2097 Female, age 72, unknown 33.1
1890 Male, age 53, unknown 31.8
Median raphe nucleus
nTPM: 34.5
2220 Male, age 76, midline 34.5
Pedunculopontine tegmental nucleus
nTPM: 33.1
2334 Male, age 80, both hemispheres 35.5
1921 Female, age 85, both hemispheres 33.7
2338 Male, age 61, both hemispheres 30.2
Periaquaductal grey, anterior
nTPM: 33.1
1947 Male, age 18, unknown 34.9
2502 Female, age 75, unknown 32.5
1795 Male, age 51, unknown 32.0
Periaquaductal grey, dorsal
nTPM: 31.9
2464 Female, age 72, unknown 32.6
1831 Male, age 72, unknown 31.9
2850 Male, age 76, both hemispheres 31.9
1840 Male, age 53, unknown 31.4
Periaquaductal grey, lateral
nTPM: 31.4
2053 Male, age 18, unknown 32.4
2272 Male, age 74, both hemispheres 31.2
2140 Male, age 76, both hemispheres 30.5
Pretectal area
nTPM: 33.0
1817 Female, age 42, unknown 34.2
2224 Female, age 72, unknown 34.2
2825 Male, age 18, unknown 34.0
2667 Female, age 75, unknown 33.1
2007 Male, age 72, unknown 32.9
2316 Male, age 76, right hemisphere 32.9
1815 Male, age 53, unknown 32.6
1944 Female, age 72, unknown 32.4
1816 Male, age 51, unknown 32.3
2273 Male, age 74, both hemispheres 32.1
2407 Male, age 75, both hemispheres 31.8
Red nucleus
nTPM: 34.1
1821 Female, age 72, unknown 38.2
1954 Female, age 42, unknown 35.8
1904 Male, age 53, unknown 35.3
1865 Male, age 51, unknown 34.7
2227 Male, age 72, unknown 34.7
2769 Male, age 72, unknown 34.1
2503 Female, age 72, unknown 33.9
2725 Female, age 75, unknown 33.5
2785 Male, age 18, unknown 33.1
2823 Male, age 76, right hemisphere 32.4
2584 Male, age 75, left hemisphere 31.7
2588 Male, age 74, left hemisphere 31.7
Substantia nigra
nTPM: 32.8
1889 Female, age 72, unknown 34.4
2590 Female, age 75, unknown 33.8
2409 Female, age 72, unknown 33.7
2583 Male, age 75, right hemisphere 33.5
1851 Male, age 51, unknown 33.2
1916 Female, age 42, unknown 32.7
1941 Male, age 53, unknown 32.5
2241 Male, age 72, unknown 31.7
2699 Male, age 18, unknown 31.5
2665 Male, age 74, both hemispheres 31.1
Superior colliculus
nTPM: 33.0
1839 Male, age 51, unknown 34.4
2587 Male, age 74, left hemisphere 34.3
1895 Male, age 76, right hemisphere 34.1
1796 Male, age 53, unknown 33.3
1995 Male, age 72, unknown 33.2
1913 Female, age 42, unknown 33.1
2668 Female, age 75, unknown 32.9
2261 Male, age 18, unknown 32.5
2087 Female, age 72, unknown 31.3
2664 Male, age 75, both hemispheres 31.1
Ventral tegmental area
nTPM: 33.4
2410 Female, age 72, unknown 35.3
2223 Female, age 72, unknown 34.2
2218 Male, age 76, both hemispheres 33.6
1915 Female, age 42, unknown 32.9
2021 Male, age 53, unknown 32.5
1942 Male, age 51, unknown 32.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.2
Samples: 139

Max nTPM: 31.2
Min nTPM: 14.2
Std nTPM: 2.8
Median nTPM: 21.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 31.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 28.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 27.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 26.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 26.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 26.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 26.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 25.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 25.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 25.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 25.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.4
FF:10158-103A5 76 years, female 87.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.3
Pig sample Sample description nTPM
Midbrain
nTPM: 51.3
Samples: 4

Max nTPM: 69.2
Min nTPM: 39.7
Sample A Female 69.2
Sample B Female 39.7
Sample C Male 51.5
Sample D Male 44.7
Periaqueductal gray
nTPM: 37.6
Samples: 3

Max nTPM: 40.6
Min nTPM: 35.5
Sample B Female 35.5
Sample C Male 40.6
Sample D Male 36.6
Substantia nigra
nTPM: 45.7
Samples: 4

Max nTPM: 51.4
Min nTPM: 39.7
Sample A Female 51.4
Sample B Female 39.7
Sample C Male 48.6
Sample D Male 43.2
Superior colliculi
nTPM: 49.3
Samples: 4

Max nTPM: 55.1
Min nTPM: 40.7
Sample A Female 55.1
Sample B Female 40.7
Sample C Male 52.5
Sample D Male 49.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.9
Samples: 4

Max nTPM: 77.0
Min nTPM: 73.2
Sample A Male 77.0
Sample B Male 74.5
Sample C Female 74.7
Sample D Female 73.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.5
69015823 Antisense, RP_050315_01_G06, Mouse strain C57BL/6J (56 days, male) 9.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.