MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.2 nTPM
HPA:30.2 nTPM
GTEx:27.0 nTPM
FANTOM5:173.0 Scaled Tags Per Million
Pig:33.3 nTPM
Mouse:70.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.8
2019 Male, age 18, unknown 30.5
1870 Female, age 42, unknown 30.4
1827 Male, age 72, unknown 30.2
2586 Male, age 75, left hemisphere 30.0
2411 Female, age 72, unknown 29.9
1833 Male, age 53, unknown 28.2
2828 Female, age 72, unknown 28.2
1830 Male, age 51, unknown 27.9
2666 Male, age 74, left hemisphere 26.9
2219 Male, age 76, both hemispheres 25.5
Dorsal raphe nucleus
nTPM: 29.4
2298 Female, age 72, unknown 32.0
2750 Male, age 76, both hemispheres 29.4
2047 Male, age 72, unknown 29.1
1828 Male, age 53, unknown 28.5
2016 Female, age 72, unknown 27.8
Inferior colliculus
nTPM: 28.8
2097 Female, age 72, unknown 30.6
1848 Female, age 42, unknown 28.9
1890 Male, age 53, unknown 28.4
2849 Male, age 72, unknown 27.6
Median raphe nucleus
nTPM: 30.2
2220 Male, age 76, midline 30.2
Pedunculopontine tegmental nucleus
nTPM: 29.1
2334 Male, age 80, both hemispheres 30.5
1921 Female, age 85, both hemispheres 29.3
2338 Male, age 61, both hemispheres 27.5
Periaquaductal grey, anterior
nTPM: 29.1
2502 Female, age 75, unknown 30.0
1947 Male, age 18, unknown 29.5
1795 Male, age 51, unknown 27.7
Periaquaductal grey, dorsal
nTPM: 28.9
1840 Male, age 53, unknown 29.6
2850 Male, age 76, both hemispheres 29.3
1831 Male, age 72, unknown 28.9
2464 Female, age 72, unknown 28.0
Periaquaductal grey, lateral
nTPM: 27.7
2140 Male, age 76, both hemispheres 28.8
2053 Male, age 18, unknown 28.4
2272 Male, age 74, both hemispheres 25.9
Pretectal area
nTPM: 30.2
2007 Male, age 72, unknown 32.4
1944 Female, age 72, unknown 31.8
1817 Female, age 42, unknown 31.6
1815 Male, age 53, unknown 30.7
1816 Male, age 51, unknown 30.7
2316 Male, age 76, right hemisphere 30.3
2667 Female, age 75, unknown 30.1
2224 Female, age 72, unknown 29.9
2273 Male, age 74, both hemispheres 28.6
2407 Male, age 75, both hemispheres 28.2
2825 Male, age 18, unknown 27.9
Red nucleus
nTPM: 29.5
1821 Female, age 72, unknown 31.4
2725 Female, age 75, unknown 30.5
2823 Male, age 76, right hemisphere 30.2
2588 Male, age 74, left hemisphere 30.1
1954 Female, age 42, unknown 29.9
1904 Male, age 53, unknown 29.6
2785 Male, age 18, unknown 29.6
1865 Male, age 51, unknown 29.2
2227 Male, age 72, unknown 28.8
2503 Female, age 72, unknown 28.7
2769 Male, age 72, unknown 28.2
2584 Male, age 75, left hemisphere 28.1
Substantia nigra
nTPM: 28.8
1851 Male, age 51, unknown 30.3
1889 Female, age 72, unknown 30.3
1916 Female, age 42, unknown 30.2
2241 Male, age 72, unknown 29.8
1941 Male, age 53, unknown 29.4
2590 Female, age 75, unknown 28.5
2409 Female, age 72, unknown 27.7
2665 Male, age 74, both hemispheres 27.5
2699 Male, age 18, unknown 27.3
2583 Male, age 75, right hemisphere 27.1
Superior colliculus
nTPM: 29.0
2087 Female, age 72, unknown 30.1
1796 Male, age 53, unknown 30.0
2587 Male, age 74, left hemisphere 30.0
1895 Male, age 76, right hemisphere 29.9
1913 Female, age 42, unknown 29.7
2261 Male, age 18, unknown 29.5
1839 Male, age 51, unknown 29.4
1995 Male, age 72, unknown 28.0
2668 Female, age 75, unknown 27.5
2664 Male, age 75, both hemispheres 26.3
Ventral tegmental area
nTPM: 28.8
2218 Male, age 76, both hemispheres 29.9
1915 Female, age 42, unknown 29.3
1942 Male, age 51, unknown 28.9
2223 Female, age 72, unknown 28.7
2410 Female, age 72, unknown 28.6
2021 Male, age 53, unknown 27.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.0
Samples: 139

Max nTPM: 69.6
Min nTPM: 11.5
Std nTPM: 9.4
Median nTPM: 25.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 69.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 59.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 58.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 54.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 54.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 53.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 49.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 47.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 45.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 44.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 42.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.0
FF:10158-103A5 76 years, female 173.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.3
Pig sample Sample description nTPM
Midbrain
nTPM: 33.0
Samples: 4

Max nTPM: 34.9
Min nTPM: 28.7
Sample A Female 34.9
Sample B Female 34.7
Sample C Male 28.7
Sample D Male 33.5
Periaqueductal gray
nTPM: 33.3
Samples: 3

Max nTPM: 34.6
Min nTPM: 31.5
Sample B Female 34.6
Sample C Male 31.5
Sample D Male 33.9
Substantia nigra
nTPM: 30.0
Samples: 4

Max nTPM: 31.1
Min nTPM: 28.4
Sample A Female 28.4
Sample B Female 30.5
Sample C Male 29.9
Sample D Male 31.1
Superior colliculi
nTPM: 29.1
Samples: 4

Max nTPM: 30.3
Min nTPM: 27.5
Sample A Female 30.3
Sample B Female 28.7
Sample C Male 27.5
Sample D Male 29.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.7
Samples: 4

Max nTPM: 73.4
Min nTPM: 68.8
Sample A Male 73.4
Sample B Male 70.4
Sample C Female 68.8
Sample D Female 70.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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