BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:3.1 nTPM
HPA:3.1 nTPM
GTEx:3.7 nTPM
FANTOM5:36.8 Scaled Tags Per Million
Pig:11.6 nTPM
Mouse:18.6 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB003693
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.6
2288 Male, age 75, left hemisphere 2.6
2846 Female, age 79, unknown 2.4
2290 Female, age 72, unknown 2.0
1857 Female, age 85, left hemisphere 1.8
1781 Male, age 74, unknown 1.4
1854 Male, age 80, left hemisphere 1.4
2289 Male, age 61, right hemisphere 0.9
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 2.6
2392 Female, age 94, both hemispheres 3.6
2284 Female, age 91, both hemispheres 3.5
2568 Male, age 61, both hemispheres 3.1
2292 Female, age 85, both hemispheres 2.8
2491 Male, age 75, both hemispheres 2.6
1956 Male, age 74, unknown 2.4
2196 Female, age 79, unknown 2.0
2198 Male, age 80, both hemispheres 1.9
2645 Female, age 72, unknown 1.3
Globus pallidus, externus
nTPM: 1.8
2567 Female, age 72, unknown 3.2
2395 Male, age 75, both hemispheres 3.0
1996 Male, age 80, right hemisphere 1.1
2772 Female, age 79, unknown 1.0
2646 Male, age 61, right hemisphere 0.8
Globus pallidus, internus
nTPM: 2.3
2287 Male, age 75, right hemisphere 3.2
2111 Female, age 85, right hemisphere 3.0
2778 Female, age 91, both hemispheres 2.8
2566 Female, age 72, unknown 2.4
1818 Male, age 74, unknown 2.2
2483 Female, age 94, right hemisphere 1.8
2037 Male, age 80, right hemisphere 0.9
Nucleus accumbens
nTPM: 2.4
2824 Male, age 61, right hemisphere 3.7
2698 Female, age 72, unknown 3.5
2286 Male, age 75, left hemisphere 2.9
1856 Female, age 91, right hemisphere 2.3
2391 Female, age 94, left hemisphere 2.3
1783 Male, age 74, unknown 2.0
1806 Female, age 85, left hemisphere 1.4
2732 Male, age 80, right hemisphere 1.2
Nucleus basalis of Meynert
nTPM: 1.7
2821 Male, age 75, both hemispheres 2.7
2393 Male, age 80, right hemisphere 2.6
2484 Female, age 94, left hemisphere 1.7
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 3.0
2029 Male, age 61, right hemisphere 4.4
2195 Female, age 85, both hemispheres 2.8
2775 Male, age 80, right hemisphere 2.8
1979 Male, age 74, unknown 2.6
1812 Female, age 91, both hemispheres 2.2
Olfactory tubercle
nTPM: 3.1
2487 Female, age 94, left hemisphere 3.7
1846 Male, age 80, right hemisphere 3.3
2856 Male, age 75, right hemisphere 2.9
1998 Female, age 91, both hemispheres 2.5
Putamen
nTPM: 2.0
2647 Male, age 75, left hemisphere 2.3
1829 Male, age 74, unknown 2.2
1838 Male, age 80, right hemisphere 2.2
1937 Female, age 91, right hemisphere 2.1
2489 Female, age 72, unknown 1.9
2466 Female, age 79, unknown 1.8
2482 Female, age 94, left hemisphere 1.3
Septal nuclei
nTPM: 2.1
2629 Female, age 94, right hemisphere 3.5
2009 Female, age 91, both hemispheres 2.8
1960 Male, age 74, unknown 2.5
2031 Female, age 72, unknown 2.4
2059 Female, age 85, both hemispheres 1.9
2199 Male, age 80, right hemisphere 1.2
2394 Male, age 61, left hemisphere 0.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.6
Samples: 246

Max nTPM: 5.8
Min nTPM: 2.0
Std nTPM: 0.6
Median nTPM: 3.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 5.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 5.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 5.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 5.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 5.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 4.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 4.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 4.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 4.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 4.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 4.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.7
Samples: 246

Max nTPM: 5.9
Min nTPM: 1.9
Std nTPM: 0.6
Median nTPM: 3.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 5.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 5.6
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 5.5
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 5.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 5.4
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 5.3
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 5.1
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 5.0
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 4.9
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 4.8
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 4.8
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Brain - Putamen (basal ganglia)
Average nTPM: 3.7
Samples: 205

Max nTPM: 8.2
Min nTPM: 2.2
Std nTPM: 0.7
Median nTPM: 3.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 8.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 6.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 5.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 5.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 5.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 5.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 5.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 4.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 4.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 4.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 4.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.2
FF:10164-103B2 76 years, female 20.2
Globus pallidus
Scaled Tags Per Million: 27.0
FF:10175-103C4 60 years, female 31.5
FF:10161-103A8 76 years, female 22.5
Nucleus accumbens
Scaled Tags Per Million: 36.8
FF:10037-101F1 23-56 years, mixed 36.8
Putamen
Scaled Tags Per Million: 31.4
FF:10176-103C5 60 years, female 31.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.6
Pig sample Sample description nTPM
Caudate
nTPM: 8.5
Samples: 4

Max nTPM: 9.6
Min nTPM: 7.7
Sample A Female 9.6
Sample B Female 8.4
Sample C Male 8.3
Sample D Male 7.7
Putamen
nTPM: 9.6
Samples: 4

Max nTPM: 11.4
Min nTPM: 8.3
Sample A Female 9.6
Sample B Female 8.3
Sample C Male 11.4
Sample D Male 9.1
Septum
nTPM: 11.6
Samples: 4

Max nTPM: 13.5
Min nTPM: 10.4
Sample A Female 11.5
Sample B Female 10.4
Sample C Male 13.5
Sample D Male 11.0
Ventral pallidum
nTPM: 9.5
Samples: 4

Max nTPM: 10.4
Min nTPM: 9.0
Sample A Female 10.4
Sample B Female 9.1
Sample C Male 9.0
Sample D Male 9.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 18.4
Samples: 4

Max nTPM: 20.3
Min nTPM: 15.8
Sample A Male 20.3
Sample B Male 19.8
Sample C Female 15.8
Sample D Female 17.7
Septum
nTPM: 18.6
Samples: 4

Max nTPM: 19.6
Min nTPM: 18.2
Sample A Male 18.2
Sample B Male 19.6
Sample C Female 18.4
Sample D Female 18.3
Ventral forebrain
nTPM: 16.8
Samples: 4

Max nTPM: 19.3
Min nTPM: 14.1
Sample A Male 19.3
Sample B Male 17.8
Sample C Female 14.1
Sample D Female 15.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
70429333 Antisense, RP_050614_01_E01, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.1
70429333 Antisense, RP_050614_01_E01, Mouse strain C57BL/6J (56 days, male) 0.1

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