MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:10.4 nTPM
HPA:10.4 nTPM
GTEx:8.9 nTPM
FANTOM5:9.3 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:18.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.5
2586 Male, age 75, left hemisphere 11.3
1870 Female, age 42, unknown 10.0
2411 Female, age 72, unknown 10.0
2828 Female, age 72, unknown 9.7
1830 Male, age 51, unknown 9.5
1833 Male, age 53, unknown 9.2
1827 Male, age 72, unknown 9.1
2019 Male, age 18, unknown 9.0
2666 Male, age 74, left hemisphere 8.9
2219 Male, age 76, both hemispheres 8.4
Dorsal raphe nucleus
nTPM: 10.4
2298 Female, age 72, unknown 11.0
2016 Female, age 72, unknown 10.6
2047 Male, age 72, unknown 10.4
1828 Male, age 53, unknown 10.0
2750 Male, age 76, both hemispheres 9.9
Inferior colliculus
nTPM: 9.6
2849 Male, age 72, unknown 9.7
1890 Male, age 53, unknown 9.6
2097 Female, age 72, unknown 9.5
1848 Female, age 42, unknown 9.4
Median raphe nucleus
nTPM: 10.0
2220 Male, age 76, midline 10.0
Pedunculopontine tegmental nucleus
nTPM: 9.5
2338 Male, age 61, both hemispheres 9.8
2334 Male, age 80, both hemispheres 9.6
1921 Female, age 85, both hemispheres 9.1
Periaquaductal grey, anterior
nTPM: 9.4
1795 Male, age 51, unknown 9.9
1947 Male, age 18, unknown 9.5
2502 Female, age 75, unknown 8.9
Periaquaductal grey, dorsal
nTPM: 10.1
2850 Male, age 76, both hemispheres 10.6
1831 Male, age 72, unknown 10.3
1840 Male, age 53, unknown 10.0
2464 Female, age 72, unknown 9.4
Periaquaductal grey, lateral
nTPM: 10.2
2272 Male, age 74, both hemispheres 10.4
2053 Male, age 18, unknown 10.1
2140 Male, age 76, both hemispheres 10.1
Pretectal area
nTPM: 9.5
2273 Male, age 74, both hemispheres 10.6
2224 Female, age 72, unknown 9.9
2316 Male, age 76, right hemisphere 9.8
1815 Male, age 53, unknown 9.6
2825 Male, age 18, unknown 9.5
2407 Male, age 75, both hemispheres 9.4
1817 Female, age 42, unknown 9.3
2007 Male, age 72, unknown 9.3
2667 Female, age 75, unknown 9.3
1816 Male, age 51, unknown 9.0
1944 Female, age 72, unknown 8.5
Red nucleus
nTPM: 9.5
1865 Male, age 51, unknown 9.9
2785 Male, age 18, unknown 9.8
1821 Female, age 72, unknown 9.6
1954 Female, age 42, unknown 9.6
2769 Male, age 72, unknown 9.6
2227 Male, age 72, unknown 9.5
2588 Male, age 74, left hemisphere 9.5
2725 Female, age 75, unknown 9.5
2503 Female, age 72, unknown 9.4
1904 Male, age 53, unknown 9.3
2823 Male, age 76, right hemisphere 9.3
2584 Male, age 75, left hemisphere 9.1
Substantia nigra
nTPM: 9.4
2583 Male, age 75, right hemisphere 10.1
2590 Female, age 75, unknown 9.9
1851 Male, age 51, unknown 9.8
2241 Male, age 72, unknown 9.6
2409 Female, age 72, unknown 9.6
1941 Male, age 53, unknown 9.5
2699 Male, age 18, unknown 9.3
1916 Female, age 42, unknown 9.2
1889 Female, age 72, unknown 8.9
2665 Male, age 74, both hemispheres 8.7
Superior colliculus
nTPM: 9.5
1796 Male, age 53, unknown 9.8
1913 Female, age 42, unknown 9.8
2261 Male, age 18, unknown 9.8
2587 Male, age 74, left hemisphere 9.7
2668 Female, age 75, unknown 9.7
2664 Male, age 75, both hemispheres 9.6
1995 Male, age 72, unknown 9.5
1895 Male, age 76, right hemisphere 9.3
1839 Male, age 51, unknown 9.1
2087 Female, age 72, unknown 8.7
Ventral tegmental area
nTPM: 9.8
2223 Female, age 72, unknown 10.3
1915 Female, age 42, unknown 10.1
2021 Male, age 53, unknown 10.1
2410 Female, age 72, unknown 9.5
1942 Male, age 51, unknown 9.4
2218 Male, age 76, both hemispheres 9.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.9
Samples: 139

Max nTPM: 13.8
Min nTPM: 4.9
Std nTPM: 1.9
Median nTPM: 8.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 13.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 13.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 13.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 13.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 13.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 12.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 12.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 12.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 12.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 12.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 12.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.3
FF:10158-103A5 76 years, female 9.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.6
Pig sample Sample description nTPM
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 15.6
Min nTPM: 12.7
Sample A Female 15.6
Sample B Female 12.9
Sample C Male 13.1
Sample D Male 12.7
Periaqueductal gray
nTPM: 13.3
Samples: 3

Max nTPM: 14.1
Min nTPM: 12.6
Sample B Female 12.6
Sample C Male 13.1
Sample D Male 14.1
Substantia nigra
nTPM: 13.6
Samples: 4

Max nTPM: 14.5
Min nTPM: 12.6
Sample A Female 13.5
Sample B Female 14.5
Sample C Male 12.6
Sample D Male 13.6
Superior colliculi
nTPM: 12.3
Samples: 4

Max nTPM: 13.9
Min nTPM: 11.5
Sample A Female 11.7
Sample B Female 13.9
Sample C Male 12.2
Sample D Male 11.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.7
Samples: 4

Max nTPM: 21.5
Min nTPM: 16.7
Sample A Male 19.7
Sample B Male 16.7
Sample C Female 17.0
Sample D Female 21.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68151420 Antisense, RP_041116_01_B10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.