MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:250.3 nTPM
HPA:250.3 nTPM
GTEx:426.0 nTPM
FANTOM5:224.2 Scaled Tags Per Million
Pig:0.3 nTPM
Mouse:196.7 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 250.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 244.1
1870 Female, age 42, unknown 255.7
2666 Male, age 74, left hemisphere 250.7
2219 Male, age 76, both hemispheres 248.6
2586 Male, age 75, left hemisphere 244.8
1827 Male, age 72, unknown 243.1
1833 Male, age 53, unknown 241.1
2411 Female, age 72, unknown 239.8
1830 Male, age 51, unknown 239.7
2019 Male, age 18, unknown 239.0
2828 Female, age 72, unknown 238.1
Dorsal raphe nucleus
nTPM: 240.2
2016 Female, age 72, unknown 242.3
2298 Female, age 72, unknown 242.0
1828 Male, age 53, unknown 240.3
2750 Male, age 76, both hemispheres 239.2
2047 Male, age 72, unknown 237.1
Inferior colliculus
nTPM: 243.7
2849 Male, age 72, unknown 248.3
1890 Male, age 53, unknown 248.1
1848 Female, age 42, unknown 242.1
2097 Female, age 72, unknown 236.2
Median raphe nucleus
nTPM: 244.4
2220 Male, age 76, midline 244.4
Pedunculopontine tegmental nucleus
nTPM: 250.3
2338 Male, age 61, both hemispheres 261.5
2334 Male, age 80, both hemispheres 252.4
1921 Female, age 85, both hemispheres 236.9
Periaquaductal grey, anterior
nTPM: 239.5
2502 Female, age 75, unknown 243.7
1947 Male, age 18, unknown 238.2
1795 Male, age 51, unknown 236.6
Periaquaductal grey, dorsal
nTPM: 243.5
1840 Male, age 53, unknown 248.3
2850 Male, age 76, both hemispheres 246.6
1831 Male, age 72, unknown 243.9
2464 Female, age 72, unknown 235.1
Periaquaductal grey, lateral
nTPM: 235.5
2053 Male, age 18, unknown 242.1
2140 Male, age 76, both hemispheres 236.1
2272 Male, age 74, both hemispheres 228.3
Pretectal area
nTPM: 239.8
1817 Female, age 42, unknown 244.4
1815 Male, age 53, unknown 243.8
1816 Male, age 51, unknown 242.3
2825 Male, age 18, unknown 242.2
2007 Male, age 72, unknown 241.3
2407 Male, age 75, both hemispheres 240.4
2667 Female, age 75, unknown 239.1
2224 Female, age 72, unknown 239.0
1944 Female, age 72, unknown 238.4
2316 Male, age 76, right hemisphere 237.5
2273 Male, age 74, both hemispheres 229.8
Red nucleus
nTPM: 248.5
2503 Female, age 72, unknown 261.9
1821 Female, age 72, unknown 256.3
2588 Male, age 74, left hemisphere 251.9
1865 Male, age 51, unknown 250.6
1904 Male, age 53, unknown 249.4
2584 Male, age 75, left hemisphere 247.9
2227 Male, age 72, unknown 245.8
1954 Female, age 42, unknown 245.0
2725 Female, age 75, unknown 244.2
2769 Male, age 72, unknown 243.8
2823 Male, age 76, right hemisphere 243.4
2785 Male, age 18, unknown 241.8
Substantia nigra
nTPM: 248.1
2409 Female, age 72, unknown 262.8
2699 Male, age 18, unknown 254.2
2665 Male, age 74, both hemispheres 253.2
1851 Male, age 51, unknown 251.7
2590 Female, age 75, unknown 247.2
1889 Female, age 72, unknown 246.7
2241 Male, age 72, unknown 245.5
1916 Female, age 42, unknown 243.8
1941 Male, age 53, unknown 242.2
2583 Male, age 75, right hemisphere 234.1
Superior colliculus
nTPM: 244.5
1913 Female, age 42, unknown 252.7
2587 Male, age 74, left hemisphere 251.8
1995 Male, age 72, unknown 249.7
1895 Male, age 76, right hemisphere 245.4
2668 Female, age 75, unknown 244.4
1839 Male, age 51, unknown 244.2
2664 Male, age 75, both hemispheres 241.0
2261 Male, age 18, unknown 240.6
1796 Male, age 53, unknown 239.8
2087 Female, age 72, unknown 235.3
Ventral tegmental area
nTPM: 243.9
2223 Female, age 72, unknown 252.7
1915 Female, age 42, unknown 250.7
1942 Male, age 51, unknown 242.5
2021 Male, age 53, unknown 241.2
2218 Male, age 76, both hemispheres 240.1
2410 Female, age 72, unknown 236.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 426.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 426.0
Samples: 139

Max nTPM: 1222.2
Min nTPM: 212.3
Std nTPM: 152.8
Median nTPM: 391.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1222.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1176.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 939.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 751.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 719.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 683.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 666.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 661.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 651.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 649.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 649.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 224.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 224.2
FF:10158-103A5 76 years, female 224.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.3
Pig sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.2
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.2
Samples: 3

Max nTPM: 0.4
Min nTPM: 0.1
Sample B Female 0.2
Sample C Male 0.4
Sample D Male 0.1
Substantia nigra
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.3
Sample C Male 0.2
Sample D Male 0.4
Superior colliculi
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 196.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 196.7
Samples: 4

Max nTPM: 205.2
Min nTPM: 187.6
Sample A Male 197.9
Sample B Male 205.2
Sample C Female 187.6
Sample D Female 196.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
68445143 Antisense, RP_050111_02_H03, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.