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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:56.3 nTPM
HPA:56.3 nTPM
GTEx:106.6 nTPM
FANTOM5:83.7 Scaled Tags Per Million
Pig:16.7 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 56.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 49.8
2048 Male, age 55, midline 57.5
1981 Female, age 72, midline 54.9
2194 Female, age 79, both hemispheres 48.4
2816 Male, age 47, midline 46.5
2565 Male, age 75, midline 41.5
Cervical spinal cord, dorsal horn
nTPM: 54.8
2173 Female, age 72, unknown 64.9
2296 Male, age 66, both hemispheres 59.2
2069 Male, age 47, both hemispheres 58.8
1877 Male, age 55, unknown 55.7
2297 Male, age 75, both hemispheres 45.9
2721 Male, age 90, both hemispheres 44.4
Cervical spinal cord, ventral horn
nTPM: 56.3
2098 Female, age 72, unknown 65.1
2295 Male, age 66, both hemispheres 59.5
2809 Male, age 90, both hemispheres 59.0
2480 Male, age 75, both hemispheres 58.3
2068 Male, age 55, unknown 49.3
2820 Female, age 79, both hemispheres 46.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 106.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 106.6
Samples: 159

Max nTPM: 187.8
Min nTPM: 55.5
Std nTPM: 24.1
Median nTPM: 103.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 187.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 178.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 176.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 158.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 157.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 152.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 151.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 151.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 145.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 144.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 144.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 142.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 141.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 140.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 138.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 137.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 137.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 137.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 134.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 134.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 133.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 132.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 132.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 132.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 132.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 129.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 129.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 128.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 128.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 128.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 128.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 127.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 127.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 126.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 125.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 124.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 124.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 122.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 121.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 121.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 121.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 120.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 119.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 119.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 119.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 118.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 118.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 116.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 116.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 116.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 116.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 115.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 115.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 114.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 113.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 113.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 112.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 112.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 111.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 111.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 111.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 111.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 109.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 109.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 109.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 109.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 109.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 109.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 108.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 107.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 106.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 106.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 105.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 105.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 105.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 104.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 104.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 104.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 104.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 103.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 103.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 103.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 103.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 103.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 103.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 103.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 102.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 102.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 101.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 101.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 100.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 100.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 100.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 99.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 99.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 99.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 99.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 98.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 98.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 97.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 97.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 97.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 97.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 97.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 96.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 96.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 96.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 94.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 94.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 94.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 94.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 94.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 93.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 93.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 92.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 91.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 90.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 89.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 88.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 87.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 87.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 86.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 86.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 86.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 86.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 85.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 84.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 84.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 83.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 83.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 83.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 83.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 82.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 82.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 82.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 81.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 81.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 81.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 80.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 80.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 79.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 79.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 79.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 79.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 78.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 77.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 76.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 76.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 76.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 72.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 72.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 70.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 66.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 65.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 65.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 62.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 59.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 56.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 55.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 83.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 83.7
FF:10159-103A6 76 years, female 108.9
FF:10181-103D1 60 years, female 58.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 16.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 16.4
Samples: 4

Max nTPM: 19.0
Min nTPM: 13.6
Sample A Female 13.6
Sample B Female 19.0
Sample C Male 16.1
Sample D Male 16.7
Ventral spinal cord
nTPM: 16.8
Samples: 4

Max nTPM: 23.1
Min nTPM: 13.8
Sample A Female 13.8
Sample B Female 15.9
Sample C Male 14.2
Sample D Male 23.1

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