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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:26.2 nTPM
GTEx:26.2 nTPM
FANTOM5:11.8 Scaled Tags Per Million
Pig:58.5 nTPM
Mouse:21.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 26.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 26.2
Samples: 105

Max nTPM: 37.1
Min nTPM: 15.5
Std nTPM: 4.8
Median nTPM:
42_1 85 years, male 37.1
35_1 74 years, female 36.6
119_1 70 years, female 35.8
137_1 83 years, male 35.0
142_1 61 years, female 35.0
307_1 66 years, female 34.9
32_1 67 years, male 33.7
117_1 61 years, male 33.7
2_1 77 years, female 33.3
491_1 89 years, female 33.3
495_1 57 years, female 33.0
41_1 94 years, female 32.7
43_1 64 years, female 32.7
490_1 67 years, female 32.6
89_1 63 years, male 32.5
6_1 73 years, female 32.3
237_1 82 years, male 32.3
308_1 70 years, female 31.8
17_1 71 years, male 31.4
120_1 70 years, female 31.3
162_1 79 years, female 31.2
145_1 84 years, male 31.1
126_1 63 years, male 31.0
375_1 74 years, female 30.7
149_1 88 years, male 30.2
173_1 67 years, male 30.1
4_1 88 years, female 29.9
139_1 64 years, female 29.5
266_1 85 years, male 29.5
315_1 62 years, female 29.4
414_1 84 years, female 29.3
347_1 72 years, male 29.1
415_1 77 years, female 29.0
115_1 83 years, male 28.7
81_1 67 years, male 28.6
311_1 78 years, male 28.5
314_1 67 years, male 28.5
99_1 64 years, male 28.3
18_1 88 years, male 28.2
384_1 83 years, male 27.9
379_1 60 years, male 27.4
313_1 79 years, female 27.3
413_1 59 years, female 27.3
265_1 87 years, male 27.0
317_1 60 years, male 26.8
324_1 76 years, male 26.5
447_1 81 years, male 26.5
288_1 66 years, female 26.2
189_1 76 years, male 26.1
466_1 57 years, female 25.7
229_1 69 years, female 25.4
501_1 88 years, male 25.3
217_1 76 years, male 25.1
322_1 76 years, male 24.8
468_1 89 years, male 24.7
153_1 70 years, female 24.6
9_1 66 years, female 24.5
348_1 84 years, male 24.4
109_1 81 years, female 24.3
499_1 55 years, female 24.2
355_1 70 years, female 24.1
406_1 79 years, male 24.0
335_1 73 years, female 23.8
518_1 75 years, female 23.7
394_1 75 years, female 23.6
404_1 82 years, female 23.6
254_1 77 years, female 23.3
264_1 73 years, female 23.3
218_1 71 years, female 23.1
293_1 68 years, female 23.0
251_1 78 years, male 22.8
319_1 81 years, male 22.8
243_1 75 years, male 22.7
295_1 61 years, female 22.7
291_1 76 years, male 22.6
506_1 65 years, male 22.6
354_1 81 years, female 22.4
318_1 68 years, male 22.3
172_1 72 years, female 22.0
246_1 77 years, male 22.0
389_1 86 years, female 22.0
350_1 84 years, female 21.9
452_1 88 years, female 21.9
396_1 62 years, male 21.5
526_1 61 years, male 21.5
352_1 62 years, male 21.4
480_1 63 years, male 21.4
316_1 62 years, male 21.1
349_1 83 years, male 21.1
356_1 87 years, female 21.1
163_1 78 years, male 20.8
320_1 89 years, female 20.7
425_1 59 years, female 20.6
286_1 68 years, female 20.5
321_1 62 years, female 20.5
353_1 82 years, female 20.5
376_1 75 years, female 20.4
386_1 76 years, male 20.3
177_1 74 years, male 20.2
351_1 91 years, male 20.2
405_1 91 years, male 20.2
377_1 82 years, female 20.0
517_1 88 years, male 19.6
292_1 71 years, male 18.1
503_1 68 years, male 15.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 11.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 11.8
FF:10030-101E3 24-65 years, mixed 11.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 58.5
Pig sample Sample description nTPM
Retina
nTPM: 58.5
Samples: 4

Max nTPM: 63.9
Min nTPM: 53.6
Sample A Female 58.5
Sample B Female 53.6
Sample C Male 63.9
Sample D Male 57.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 21.3
Mouse sample Sample description nTPM
Retina
nTPM: 21.3
Samples: 4

Max nTPM: 30.2
Min nTPM: 14.0
Sample A Male 19.7
Sample B Male 21.2
Sample C Female 14.0
Sample D Female 30.2

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.