MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:196.2 nTPM
HPA:196.2 nTPM
GTEx:227.8 nTPM
FANTOM5:126.1 Scaled Tags Per Million
Pig:58.3 nTPM
Mouse:75.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 196.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 168.8
2828 Female, age 72, unknown 196.4
1827 Male, age 72, unknown 179.2
2586 Male, age 75, left hemisphere 179.0
2219 Male, age 76, both hemispheres 175.7
2666 Male, age 74, left hemisphere 173.9
2411 Female, age 72, unknown 165.3
2019 Male, age 18, unknown 157.7
1870 Female, age 42, unknown 155.8
1833 Male, age 53, unknown 154.9
1830 Male, age 51, unknown 149.9
Dorsal raphe nucleus
nTPM: 182.9
2298 Female, age 72, unknown 198.5
1828 Male, age 53, unknown 188.7
2047 Male, age 72, unknown 186.3
2016 Female, age 72, unknown 181.9
2750 Male, age 76, both hemispheres 159.2
Inferior colliculus
nTPM: 154.9
2097 Female, age 72, unknown 159.1
2849 Male, age 72, unknown 156.4
1890 Male, age 53, unknown 153.0
1848 Female, age 42, unknown 151.0
Median raphe nucleus
nTPM: 194.7
2220 Male, age 76, midline 194.7
Pedunculopontine tegmental nucleus
nTPM: 163.8
2334 Male, age 80, both hemispheres 172.1
1921 Female, age 85, both hemispheres 171.4
2338 Male, age 61, both hemispheres 148.0
Periaquaductal grey, anterior
nTPM: 188.3
1795 Male, age 51, unknown 202.9
1947 Male, age 18, unknown 200.6
2502 Female, age 75, unknown 161.3
Periaquaductal grey, dorsal
nTPM: 169.0
2850 Male, age 76, both hemispheres 178.4
1840 Male, age 53, unknown 171.8
1831 Male, age 72, unknown 171.5
2464 Female, age 72, unknown 154.4
Periaquaductal grey, lateral
nTPM: 165.2
2272 Male, age 74, both hemispheres 175.1
2140 Male, age 76, both hemispheres 165.9
2053 Male, age 18, unknown 154.7
Pretectal area
nTPM: 174.7
2667 Female, age 75, unknown 199.9
2273 Male, age 74, both hemispheres 191.0
1944 Female, age 72, unknown 187.1
1816 Male, age 51, unknown 177.7
2224 Female, age 72, unknown 174.6
2407 Male, age 75, both hemispheres 173.2
1817 Female, age 42, unknown 173.1
2007 Male, age 72, unknown 172.5
1815 Male, age 53, unknown 166.7
2825 Male, age 18, unknown 162.3
2316 Male, age 76, right hemisphere 143.5
Red nucleus
nTPM: 155.3
2725 Female, age 75, unknown 197.3
1821 Female, age 72, unknown 162.1
1954 Female, age 42, unknown 157.8
2785 Male, age 18, unknown 157.3
2503 Female, age 72, unknown 156.2
2769 Male, age 72, unknown 156.2
2227 Male, age 72, unknown 154.4
2584 Male, age 75, left hemisphere 149.5
2823 Male, age 76, right hemisphere 147.3
1904 Male, age 53, unknown 146.5
1865 Male, age 51, unknown 141.2
2588 Male, age 74, left hemisphere 138.0
Substantia nigra
nTPM: 190.0
1916 Female, age 42, unknown 262.5
1851 Male, age 51, unknown 225.7
1941 Male, age 53, unknown 222.2
2699 Male, age 18, unknown 207.9
1889 Female, age 72, unknown 182.8
2583 Male, age 75, right hemisphere 170.5
2409 Female, age 72, unknown 162.7
2241 Male, age 72, unknown 162.1
2665 Male, age 74, both hemispheres 161.2
2590 Female, age 75, unknown 142.1
Superior colliculus
nTPM: 164.4
1796 Male, age 53, unknown 180.8
2664 Male, age 75, both hemispheres 177.8
2668 Female, age 75, unknown 171.0
2087 Female, age 72, unknown 170.6
2587 Male, age 74, left hemisphere 166.5
2261 Male, age 18, unknown 164.1
1995 Male, age 72, unknown 162.7
1913 Female, age 42, unknown 154.6
1839 Male, age 51, unknown 152.2
1895 Male, age 76, right hemisphere 144.1
Ventral tegmental area
nTPM: 196.2
1915 Female, age 42, unknown 233.3
2218 Male, age 76, both hemispheres 211.6
1942 Male, age 51, unknown 201.3
2410 Female, age 72, unknown 183.7
2223 Female, age 72, unknown 176.4
2021 Male, age 53, unknown 171.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 227.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 227.8
Samples: 139

Max nTPM: 432.1
Min nTPM: 82.4
Std nTPM: 85.1
Median nTPM: 206.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 432.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 421.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 419.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 401.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 395.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 392.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 384.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 383.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 379.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 379.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 372.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.1
FF:10158-103A5 76 years, female 126.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.3
Pig sample Sample description nTPM
Midbrain
nTPM: 31.5
Samples: 4

Max nTPM: 47.1
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 44.2
Sample C Male 29.2
Sample D Male 47.1
Periaqueductal gray
nTPM: 38.0
Samples: 3

Max nTPM: 53.1
Min nTPM: 26.7
Sample B Female 34.2
Sample C Male 53.1
Sample D Male 26.7
Substantia nigra
nTPM: 58.3
Samples: 4

Max nTPM: 97.6
Min nTPM: 9.3
Sample A Female 97.6
Sample B Female 39.5
Sample C Male 86.8
Sample D Male 9.3
Superior colliculi
nTPM: 35.1
Samples: 4

Max nTPM: 56.6
Min nTPM: 14.7
Sample A Female 56.6
Sample B Female 14.7
Sample C Male 28.9
Sample D Male 40.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 75.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.7
Samples: 4

Max nTPM: 91.4
Min nTPM: 61.9
Sample A Male 91.4
Sample B Male 73.0
Sample C Female 61.9
Sample D Female 76.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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