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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:668.4 nTPM
GTEx:668.4 nTPM
FANTOM5:76.3 Scaled Tags Per Million
Pig:1100.5 nTPM
Mouse:7803.5 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA062235
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 668.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 668.4
Samples: 105

Max nTPM: 1238.9
Min nTPM: 247.5
Std nTPM: 231.9
Median nTPM:
414_1 84 years, female 1238.9
518_1 75 years, female 1229.4
491_1 89 years, female 1224.5
149_1 88 years, male 1220.7
413_1 59 years, female 1195.8
466_1 57 years, female 1145.5
139_1 64 years, female 1136.5
246_1 77 years, male 1106.4
322_1 76 years, male 1076.0
490_1 67 years, female 1059.5
415_1 77 years, female 1035.8
126_1 63 years, male 985.7
377_1 82 years, female 979.8
217_1 76 years, male 972.5
468_1 89 years, male 968.6
389_1 86 years, female 963.6
162_1 79 years, female 948.2
43_1 64 years, female 939.1
266_1 85 years, male 925.2
153_1 70 years, female 876.7
81_1 67 years, male 857.9
316_1 62 years, male 843.4
265_1 87 years, male 815.8
251_1 78 years, male 814.6
32_1 67 years, male 793.5
35_1 74 years, female 787.7
404_1 82 years, female 785.9
320_1 89 years, female 785.8
526_1 61 years, male 750.9
115_1 83 years, male 748.2
254_1 77 years, female 736.2
425_1 59 years, female 711.2
89_1 63 years, male 706.0
503_1 68 years, male 703.2
17_1 71 years, male 699.8
229_1 69 years, female 692.4
501_1 88 years, male 692.3
18_1 88 years, male 686.3
109_1 81 years, female 682.5
495_1 57 years, female 680.0
9_1 66 years, female 676.9
394_1 75 years, female 669.7
142_1 61 years, female 666.9
375_1 74 years, female 666.9
318_1 68 years, male 666.1
405_1 91 years, male 665.4
4_1 88 years, female 656.6
315_1 62 years, female 649.8
396_1 62 years, male 644.4
499_1 55 years, female 638.1
293_1 68 years, female 622.0
480_1 63 years, male 614.6
376_1 75 years, female 612.9
2_1 77 years, female 609.7
117_1 61 years, male 606.8
313_1 79 years, female 604.5
292_1 71 years, male 602.9
288_1 66 years, female 596.1
319_1 81 years, male 595.1
189_1 76 years, male 595.0
517_1 88 years, male 593.5
324_1 76 years, male 592.0
6_1 73 years, female 591.4
145_1 84 years, male 589.5
307_1 66 years, female 587.2
137_1 83 years, male 586.6
355_1 70 years, female 575.6
237_1 82 years, male 572.7
384_1 83 years, male 565.3
386_1 76 years, male 557.1
335_1 73 years, female 551.2
406_1 79 years, male 544.9
42_1 85 years, male 544.2
352_1 62 years, male 539.9
120_1 70 years, female 533.7
264_1 73 years, female 506.5
314_1 67 years, male 505.4
243_1 75 years, male 502.6
163_1 78 years, male 501.3
172_1 72 years, female 499.5
311_1 78 years, male 498.4
291_1 76 years, male 496.3
321_1 62 years, female 489.0
119_1 70 years, female 485.8
349_1 83 years, male 479.2
356_1 87 years, female 473.2
347_1 72 years, male 457.4
348_1 84 years, male 453.5
177_1 74 years, male 440.9
99_1 64 years, male 440.7
295_1 61 years, female 432.1
447_1 81 years, male 426.1
286_1 68 years, female 424.6
379_1 60 years, male 424.2
354_1 81 years, female 417.1
41_1 94 years, female 416.1
351_1 91 years, male 396.6
350_1 84 years, female 383.1
452_1 88 years, female 354.7
173_1 67 years, male 352.0
353_1 82 years, female 347.1
218_1 71 years, female 344.0
506_1 65 years, male 333.9
317_1 60 years, male 264.2
308_1 70 years, female 247.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 76.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 76.3
FF:10030-101E3 24-65 years, mixed 76.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1100.5
Pig sample Sample description nTPM
Retina
nTPM: 1100.6
Samples: 4

Max nTPM: 1186.3
Min nTPM: 1039.3
Sample A Female 1039.3
Sample B Female 1110.0
Sample C Male 1186.3
Sample D Male 1066.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 7803.5
Mouse sample Sample description nTPM
Retina
nTPM: 7803.6
Samples: 4

Max nTPM: 8358.2
Min nTPM: 7305.0
Sample A Male 7979.7
Sample B Male 7305.0
Sample C Female 8358.2
Sample D Female 7571.4

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