BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:76.1 nTPM
HPA:76.1 nTPM
GTEx:67.6 nTPM
FANTOM5:58.7 Scaled Tags Per Million
Pig:53.7 nTPM
Mouse:33.3 nTPM
Allen mouse:2.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA032304
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 76.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 63.8
1781 Male, age 74, unknown 75.3
1857 Female, age 85, left hemisphere 65.5
2290 Female, age 72, unknown 65.4
2846 Female, age 79, unknown 64.9
1854 Male, age 80, left hemisphere 63.4
2289 Male, age 61, right hemisphere 61.0
2481 Female, age 94, left hemisphere 59.9
2288 Male, age 75, left hemisphere 55.3
Claustrum
nTPM: 69.5
2645 Female, age 72, unknown 79.7
2491 Male, age 75, both hemispheres 74.4
2284 Female, age 91, both hemispheres 73.4
2568 Male, age 61, both hemispheres 73.2
2198 Male, age 80, both hemispheres 71.2
2392 Female, age 94, both hemispheres 65.0
1956 Male, age 74, unknown 64.9
2196 Female, age 79, unknown 64.3
2292 Female, age 85, both hemispheres 58.9
Globus pallidus, externus
nTPM: 62.7
2567 Female, age 72, unknown 68.3
2646 Male, age 61, right hemisphere 65.5
2772 Female, age 79, unknown 64.5
1996 Male, age 80, right hemisphere 60.2
2395 Male, age 75, both hemispheres 55.1
Globus pallidus, internus
nTPM: 56.3
2483 Female, age 94, right hemisphere 65.4
2566 Female, age 72, unknown 58.3
1818 Male, age 74, unknown 55.5
2037 Male, age 80, right hemisphere 55.0
2111 Female, age 85, right hemisphere 54.3
2287 Male, age 75, right hemisphere 54.1
2778 Female, age 91, both hemispheres 51.4
Nucleus accumbens
nTPM: 61.0
1783 Male, age 74, unknown 71.3
1806 Female, age 85, left hemisphere 65.9
1856 Female, age 91, right hemisphere 65.1
2824 Male, age 61, right hemisphere 62.2
2698 Female, age 72, unknown 59.2
2286 Male, age 75, left hemisphere 56.3
2732 Male, age 80, right hemisphere 54.5
2391 Female, age 94, left hemisphere 54.0
Nucleus basalis of Meynert
nTPM: 60.8
2569 Male, age 61, both hemispheres 67.6
2484 Female, age 94, left hemisphere 63.2
2393 Male, age 80, right hemisphere 58.5
2821 Male, age 75, both hemispheres 53.9
Nucleus of the diagonal band
nTPM: 68.8
2029 Male, age 61, right hemisphere 79.8
2775 Male, age 80, right hemisphere 71.3
2195 Female, age 85, both hemispheres 70.6
1812 Female, age 91, both hemispheres 65.8
1979 Male, age 74, unknown 56.3
Olfactory tubercle
nTPM: 76.1
2856 Male, age 75, right hemisphere 82.2
1998 Female, age 91, both hemispheres 79.1
2487 Female, age 94, left hemisphere 72.2
1846 Male, age 80, right hemisphere 70.9
Putamen
nTPM: 64.7
2647 Male, age 75, left hemisphere 69.7
2489 Female, age 72, unknown 68.1
1829 Male, age 74, unknown 64.2
1838 Male, age 80, right hemisphere 62.9
2466 Female, age 79, unknown 62.9
2482 Female, age 94, left hemisphere 62.9
1937 Female, age 91, right hemisphere 62.2
Septal nuclei
nTPM: 65.7
2031 Female, age 72, unknown 72.8
1960 Male, age 74, unknown 72.3
2059 Female, age 85, both hemispheres 69.0
2629 Female, age 94, right hemisphere 67.1
2009 Female, age 91, both hemispheres 63.7
2394 Male, age 61, left hemisphere 60.8
2199 Male, age 80, right hemisphere 54.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 67.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 58.0
Samples: 246

Max nTPM: 127.7
Min nTPM: 23.8
Std nTPM: 12.2
Median nTPM: 56.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 127.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 96.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 88.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 88.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 83.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 82.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 82.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 81.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 80.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 79.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 79.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 67.6
Samples: 246

Max nTPM: 119.2
Min nTPM: 20.8
Std nTPM: 15.7
Median nTPM: 66.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 119.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 117.7
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 110.3
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 109.1
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 107.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 102.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 101.8
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 101.4
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 101.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 100.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 95.5
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Brain - Putamen (basal ganglia)
Average nTPM: 61.0
Samples: 205

Max nTPM: 101.7
Min nTPM: 31.5
Std nTPM: 11.5
Median nTPM: 59.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 101.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 100.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 94.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 90.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 90.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 86.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 85.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 85.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 85.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 83.8
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 82.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 52.3
FF:10164-103B2 76 years, female 52.3
Globus pallidus
Scaled Tags Per Million: 33.2
FF:10161-103A8 76 years, female 39.5
FF:10175-103C4 60 years, female 26.8
Nucleus accumbens
Scaled Tags Per Million: 58.7
FF:10037-101F1 23-56 years, mixed 58.7
Putamen
Scaled Tags Per Million: 50.8
FF:10176-103C5 60 years, female 50.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 53.7
Pig sample Sample description nTPM
Caudate
nTPM: 50.6
Samples: 4

Max nTPM: 67.9
Min nTPM: 36.4
Sample A Female 36.4
Sample B Female 49.0
Sample C Male 67.9
Sample D Male 49.2
Putamen
nTPM: 53.7
Samples: 4

Max nTPM: 66.0
Min nTPM: 37.7
Sample A Female 37.7
Sample B Female 45.5
Sample C Male 66.0
Sample D Male 65.7
Septum
nTPM: 36.5
Samples: 4

Max nTPM: 38.8
Min nTPM: 33.9
Sample A Female 38.8
Sample B Female 36.1
Sample C Male 37.0
Sample D Male 33.9
Ventral pallidum
nTPM: 42.3
Samples: 4

Max nTPM: 54.0
Min nTPM: 33.3
Sample A Female 33.3
Sample B Female 41.7
Sample C Male 54.0
Sample D Male 40.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 33.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 32.0
Samples: 4

Max nTPM: 35.9
Min nTPM: 29.1
Sample A Male 33.2
Sample B Male 35.9
Sample C Female 29.6
Sample D Female 29.1
Septum
nTPM: 32.1
Samples: 4

Max nTPM: 34.5
Min nTPM: 28.6
Sample A Male 34.5
Sample B Male 30.8
Sample C Female 28.6
Sample D Female 34.3
Ventral forebrain
nTPM: 33.3
Samples: 4

Max nTPM: 37.0
Min nTPM: 30.4
Sample A Male 37.0
Sample B Male 32.6
Sample C Female 33.1
Sample D Female 30.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.4
70300869 Antisense, RP_050607_02_E08, Mouse strain C57BL/6J (56 days, male) 2.4
Pallidum
Expression energy: 2.7
70300869 Antisense, RP_050607_02_E08, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

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